| Protein: | SOX9 |
| Organism: | Homo sapiens |
| Length: | 509 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOX9.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-64 | [1..509] | [1..509] |
|
|
1.0E-64 | [1..509] | [1..509] |
|
|
2.0E-64 | [1..509] | [1..509] |
|
|
2.0E-64 | [1..509] | [1..509] |
|
|
5.0E-63 | [1..509] | [1..509] |
|
|
6.0E-63 | [1..509] | [1..513] |
|
|
8.0E-63 | [1..509] | [59..565] |
|
|
2.0E-62 | [1..509] | [164..670] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MNLLDPFMKM TDEQEKGLSG APSPTMSEDS AGSPCPSGSG SDTENTRPQE NTFPKGEPDL 60
61 KKESEEDKFP VCIREAVSQV LKGYDWTLVP MPVRVNGSSK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [101-260] |
1 11 21 31 41 51
| | | | | |
1 NKPHVKRPMN AFMVWAQAAR RKLADQYPHL HNAELSKTLG KLWRLLNESE KRPFVEEAER 60
61 LRVQHKKDHP DYKYQPRRRK SVKNGQAEAE EATEQTHISP NAIFKALQAD SPHSSSGMSE 120
121 VHSPGEHSGQ SQGPPTPPTT PKTDVQPGKA DLKREGRPLP
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.06355503548774 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription repressor activity | 3.17018042329608 | bayes_pls_golite062009 |
| transcription activator activity | 2.95665802871704 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| protein binding | 2.18211240370246 | bayes_pls_golite062009 |
| chromatin binding | 1.64428658020027 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.4255419067266 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.261169200304829 | bayes_pls_golite062009 |
|
Region A: Residues: [261-339] |
1 11 21 31 41 51
| | | | | |
1 EGGRQPPIDF RDVDIGELSS DVISNIETFD VNEFDQYLPP NGHPGVPATH GQVTYTGSYG 60
61 ISSTAATPAS AGHVWMSKQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [340-509] |
1 11 21 31 41 51
| | | | | |
1 QAPPPPPQQP PQAPPAPQAP PQPQAAPPQQ PAAPPQQPQA HTLTTLSSEP GQSQRTHIKT 60
61 EQLSPSHYSE QQQHSPQQIA YSPFNLPHYS PSYPPITRSQ YDYTDHQNSS SYYSHAAGQG 120
121 TGLYSTFTYM NPAQRPMYTP IADTSGVPSI PQTHSPQHWE QPVYTQLTRP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
