| Protein: | PSMD11 |
| Organism: | Homo sapiens |
| Length: | 422 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMD11.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-84 | [1..422] | [78..499] |
|
|
1.0E-78 | [1..422] | [1..422] |
|
|
4.0E-78 | [2..422] | [26..446] |
|
|
7.0E-78 | [1..422] | [1..422] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MAAAAVVEFQ RAQSLLSTDR EASIDILHSI VKRDIQENDE EAVQVKEQSI LELGSLLAKT 60
61 GQAAELGGLL KYVRPFLNSI SKAKAARLVR SLLDLFLDME A
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [102-249] |
1 11 21 31 41 51
| | | | | |
1 ATGQEVELCL ECIEWAKSEK RTFLRQALEA RLVSLYFDTK RYQEALHLGS QLLRELKKMD 60
61 DKALLVEVQL LESKTYHALS NLPKARAALT SARTTANAIY CPPKLQATLD MQSGIIHAAE 120
121 EKDWKTAYSY FYEAFEGYDS IDSPKAIT
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1na0A |
| Description: | Designed protein cTPR3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [250-319] |
1 11 21 31 41 51
| | | | | |
1 SLKYMLLCKI MLNTPEDVQA LVSGKLALRY AGRQTEALKC VAQASKNRSL ADFEKALTDY 60
61 RAELRDDPII
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [320-422] |
1 11 21 31 41 51
| | | | | |
1 STHLAKLYDN LLEQNLIRVI EPFSRVQIEH ISSLIKLSKA DVERKLSQMI LDKKFHGILD 60
61 QGEGVLIIFD EPPVDKTYEA ALETIQNMSK VVDSLYNKAK KLT
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.46680509390433 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
