| Protein: | GABBR1 |
| Organism: | Homo sapiens |
| Length: | 961 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GABBR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [16..961] | [16..961] |
|
|
0.0 | [16..961] | [16..961] |
|
|
0.0 | [16..961] | [15..960] |
|
|
0.0 | [16..961] | [15..960] |
|
|
0.0 | [73..961] | [202..1090] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MLLLLLLAPL FLRPPGAGGA QTPNATSEGC QIIHPPWEGG IRYRGLTRDQ VKAINFLPVD 60
61 YEIEYVCRGE REVVGPKVRK CLANGSWTDM
|
| Detection Method: |  |
| Confidence: | 1.06 |
| Match: | 2ehfA |
| Description: | No description for 2ehfA was found. |
|
Region A: Residues: [91-150] |
1 11 21 31 41 51
| | | | | |
1 DTPSRCVRIC SKSYLTLENG KVFLTGGDLP ALDGARVDFR CDPDFHLVGS SRSICSQGQW 60
61
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1srzA |
| Description: | Solution structure of the second complement control protein (CCP) module of the GABA(B)R1a receptor, Pro-119 trans conformer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| olfactory receptor activity | 9.71360485861748 | bayes_pls_golite062009 |
| peptide antigen binding | 9.47162360140341 | bayes_pls_golite062009 |
| GABA-B receptor activity | 7.35033638238525 | bayes_pls_golite062009 |
| GABA receptor activity | 6.90608993864808 | bayes_pls_golite062009 |
| antigen binding | 5.58808732806538 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.35860459468361 | bayes_pls_golite062009 |
| receptor activity | 4.20713357041878 | bayes_pls_golite062009 |
| cell surface binding | 3.55050906717351 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 3.3267793934617 | bayes_pls_golite062009 |
| molecular transducer activity | 3.26442969564963 | bayes_pls_golite062009 |
| signal transducer activity | 3.26442969564963 | bayes_pls_golite062009 |
| glutamate receptor activity | 3.14418732579293 | bayes_pls_golite062009 |
| protein binding | 3.02592228806142 | bayes_pls_golite062009 |
| interleukin-2 binding | 2.71513067590075 | bayes_pls_golite062009 |
| interleukin-2 receptor activity | 2.55335439762658 | bayes_pls_golite062009 |
| complement binding | 2.34774745677343 | bayes_pls_golite062009 |
| binding | 2.33940742543305 | bayes_pls_golite062009 |
| eukaryotic cell surface binding | 2.32048018940275 | bayes_pls_golite062009 |
| cytokine binding | 2.30130828185426 | bayes_pls_golite062009 |
| glycoprotein binding | 2.22789099360417 | bayes_pls_golite062009 |
| cytokine receptor activity | 2.10514365820386 | bayes_pls_golite062009 |
| lipoprotein lipase activator activity | 2.06465193625541 | bayes_pls_golite062009 |
| growth factor binding | 1.93618687932038 | bayes_pls_golite062009 |
| complement component C3b binding | 1.88857759736005 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.47508652223701 | bayes_pls_golite062009 |
| polysaccharide binding | 1.4147190450456 | bayes_pls_golite062009 |
| peptide binding | 1.27282764780447 | bayes_pls_golite062009 |
| heparin binding | 1.23765110858669 | bayes_pls_golite062009 |
| pattern binding | 1.12569810277318 | bayes_pls_golite062009 |
| opsonin binding | 1.0527649340829 | bayes_pls_golite062009 |
| catalytic activity | 0.252597265474331 | bayes_pls_golite062009 |
| enzyme inhibitor activity | 0.167507966251191 | bayes_pls_golite062009 |
| carbohydrate binding | 0.15682585610523 | bayes_pls_golite062009 |
|
Region A: Residues: [151-227] |
1 11 21 31 41 51
| | | | | |
1 STPKPHCQVN RTPHSERRAV YIGALFPMSG GWPGGQACQP AVEMALEDVN SRRDILPDYE 60
61 LKLIHHDSKC DPGQATK
|
| Detection Method: | |
| Confidence: | 2.94 |
| Match: | 1peaA |
| Description: | AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH ACETAMIDE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [228-642] |
1 11 21 31 41 51
| | | | | |
1 YLYELLYNDP IKIILMPGCS SVSTLVAEAA RMWNLIVLSY GSSSPALSNR QRFPTFFRTH 60
61 PSATLHNPTR VKLFEKWGWK KIATIQQTTE VFTSTLDDLE ERVKEAGIEI TFRQSFFSDP 120
121 AVPVKNLKRQ DARIIVGLFY ETEARKVFCE VYKERLFGKK YVWFLIGWYA DNWFKIYDPS 180
181 INCTVDEMTE AVEGHITTEI VMLNPANTRS ISNMTSQEFV EKLTKRLKRH PEETGGFQEA 240
241 PLAYDAIWAL ALALNKTSGG GGRSGVRLED FNYNNQTITD QIYRAMNSSS FEGVSGHVVF 300
301 DASGSRMAWT LIEQLQGGSY KKIGYYDSTK DDLSWSKTDK WIGGSPPADQ TLVIKTFRFL 360
361 SQKLFISVSV LSSLGIVLAV VCLSFNIYNS HVRYIQNSQP NLNNLTAVGC SLALA
|
| Detection Method: | |
| Confidence: | 36.522879 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [643-797] |
1 11 21 31 41 51
| | | | | |
1 AVFPLGLDGY HIGRNQFPFV CQARLWLLGL GFSLGYGSMF TKIWWVHTVF TKKEEKKEWR 60
61 KTLEPWKLYA TVGLLVGMDV LTLAIWQIVD PLHRTIETFA KEEPKEDIDV SILPQLEHCS 120
121 SRKMNTWLGI FYGYKGLLLL LGIFLAYETK SVSTE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [798-961] |
1 11 21 31 41 51
| | | | | |
1 KINDHRAVGM AIYNVAVLCL ITAPVTMILS SQQDAAFAFA SLAIVFSSYI TLVVLFVPKM 60
61 RRLITRGEWQ SEAQDTMKTG SSTNNNEEEK SRLLEKENRE LEKIIAEKEE RVSELRHQLQ 120
121 SRQQLRSRRH PPTPPEPSGG LPRGPPEPPD RLSCDGSRVH LLYK
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1pb7A |
| Description: | N-methyl-D-aspartate receptor subunit 1 |
Matching Structure (courtesy of the PDB): |
|
