| Protein: | KHDRBS1 |
| Organism: | Homo sapiens |
| Length: | 443 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KHDRBS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..443] | [1..443] |
|
|
0.0 | [1..443] | [1..443] |
|
|
0.0 | [1..443] | [1..443] |
|
|
0.0 | [1..443] | [1..443] |
|
|
0.0 | [1..443] | [1..418] |
|
|
0.0 | [1..443] | [205..641] |
|
|
0.0 | [21..443] | [1..405] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MQRRDDPAAR MSRSSGRSGS MDPSGAHPSV RQTPSRQPPL PHRSRGGGGG SRGGARASPA 60
61 TQPPPLLPPS ATGPDATVGG PAPTPL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [87-135] |
1 11 21 31 41 51
| | | | | |
1 LPPSATASVK MEPENKYLPE LMAEKDSLDP SFTHAMQLLT AEIEKIQKG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-297] |
1 11 21 31 41 51
| | | | | |
1 DSKKDDEENY LDLFSHKNMK LKERVLIPVK QYPKFNFVGK ILGPQGNTIK RLQEETGAKI 60
61 SVLGKGSMRD KAKEEELRKG GDPKYAHLNM DLHVFIEVFG PPCEAYALMA HAMEEVKKFL 120
121 VPDMMDDICQ EQFLELSYLN GVPEPSRGRG VPVRGRGAAP PP
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.18414740305744 | bayes_pls_golite062009 |
| nucleic acid binding | 4.48152042822746 | bayes_pls_golite062009 |
| mRNA binding | 3.82977088614136 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| transcription regulator activity | 2.54125642939085 | bayes_pls_golite062009 |
| DNA binding | 2.21410605855315 | bayes_pls_golite062009 |
| transcription repressor activity | 2.05847856402521 | bayes_pls_golite062009 |
| transcription factor activity | 1.22994056525688 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| 0.800987648548054 | bayes_pls_golite062009 | |
| signal transducer activity | 0.770583526648683 | bayes_pls_golite062009 |
| molecular transducer activity | 0.770583526648683 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription activator activity | 0.404927707462702 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.30467150200016 | bayes_pls_golite062009 |
| transcription factor binding | 0.274119533759015 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
|
Region A: Residues: [298-443] |
1 11 21 31 41 51
| | | | | |
1 PPVPRGRGVG PPRGALVRGT PVRGAITRGA TVTRGVPPPP TVRGAPAPRA RTAGIQRIPL 60
61 PPPPAPETYE EYGYDDTYAE QSYEGYEGYY SQSQGDSEYY DYGHGEVQDS YEAYGQDDWN 120
121 GTRPSLKAPP ARPVKGAYRE HPYGRY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
