| Protein: | MMS4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 691 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS4.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..54] | [690..42] |
|
Region A: Residues: [1-394] |
1 11 21 31 41 51
| | | | | |
1 MSQIVDFVED KDSRNDASIQ IIDGPSNVEI IALSESMDQD ECKRAHVSSA EMIPSSPQRK 60
61 SVSNDVENVD LNKSIELSAP FFQDISISKL DDFSTTVNSI IDSSLRNENN AKGNAKKLLD 120
121 DLISDEWSAD LESSGKKHNK SQYNLRDIAE KWGVQSLKNP EPIAVDCEYK TQGIGKTNSD 180
181 ISDSPKSQIG AADILFDFPL SPVKHENPTE EKHNSIANEN SSPDNSLKPA GKQNHGEDGT 240
241 SMAKRVYNKG EDEQEHLPKG KKRTIALSRT LINSTKLPDT VELNLSKFLD SSDSITTDVL 300
301 STPAKGSNIV RTGSQPIFSN ANCFQEAKRS KTLTAEDPKC TKNTAREVSQ LENYIAYGQY 360
361 YTREDSKNKI RHLLKENKNA FKRVNQIYRD NIKA
|
| Detection Method: |  |
| Confidence: | 1.28 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [395-456] |
1 11 21 31 41 51
| | | | | |
1 RSQMIIEFSP SLLQLFKKGD SDLQQQLAPA VVQSSYNDSM PLLRFLRKCD SIYDFSNDFY 60
61 YP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [457-691] |
1 11 21 31 41 51
| | | | | |
1 CDPKIVEENV LILYYDAQEF FEQYTSQKKE LYRKIRFFSK NGKHVILILS DINKLKRAIF 60
61 QLENEKYKAR VEQRLSGTEE ALRPRSKKSS QVGKLGIKKF DLEQRLRFID REWHVKIHTV 120
121 NSHMEFINSL PNLVSLIGKQ RMDPAIRYMK YAHLNVKSAQ DSTETLKKTF HQIGRMPEMK 180
181 ANNVVSLYPS FQSLLEDIEK GRLQSDNEGK YLMTEAVEKR LYKLFTCTDP NDTIE
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 2bgwA |
| Description: | XPF from Aeropyrum pernix, complex with DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| four-way junction helicase activity | 9.97778352333441 | bayes_pls_golite062009 |
| DNA helicase activity | 7.39534793109438 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 3.3215200974849 | bayes_pls_golite062009 |
| single-stranded DNA specific endodeoxyribonuclease activity | 3.18118446093396 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 3.15144163151183 | bayes_pls_golite062009 |
| excinuclease ABC activity | 2.93145997831744 | bayes_pls_golite062009 |
| DNA binding | 2.86703202962507 | bayes_pls_golite062009 |
| nucleic acid binding | 2.70608150305499 | bayes_pls_golite062009 |
| structure-specific DNA binding | 2.54099670773663 | bayes_pls_golite062009 |
| single-stranded DNA binding | 2.43123013915603 | bayes_pls_golite062009 |
| binding | 2.15665005558542 | bayes_pls_golite062009 |
| helicase activity | 1.95147423101621 | bayes_pls_golite062009 |
| damaged DNA binding | 1.93355995630071 | bayes_pls_golite062009 |
| nuclease activity | 1.53464565125134 | bayes_pls_golite062009 |
| endonuclease activity | 1.2384221353329 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.868370062080145 | bayes_pls_golite062009 |
| catalytic activity | 0.776505703815067 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.757551245363434 | bayes_pls_golite062009 |
| protein binding | 0.687937183662529 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.593379763919056 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.591712648797139 | bayes_pls_golite062009 |
