| Protein: | REC8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 680 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REC8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..680] | [1..680] |
|
|
0.005 | [53..107] | [27..81] |
|
Region A: Residues: [1-680] |
1 11 21 31 41 51
| | | | | |
1 MAPLSLNFKD DKKYKGLTTV WLLSALGNSI VKESNNYYSN KSNSTGNISS STVKKKDIVN 60
61 ISIPKTCDEI QNFENDFSLR YISNLLYGVT ICYNKKTEYV LNDLNHLLVQ LQKNDVYAFK 120
121 AKNKSTRING LNSNNSIIGN KNNNYTWEEC VFFDDDPLYD ITKVPALEFL NTTLQDNVSF 180
181 IEEAKSIRRQ DYINELSNSN RFELHGDMTN SDAQSNLGSN VRNSFPLDEI PVDVDFNLDL 240
241 DDIVSHQGTP LGSHSSSQKD GNDFKFNYQG DELVLNFEND NENNSNGGED TSVENEGPVA 300
301 NLKDYELGLE AQASEEENDL QQKLNTRMQR GHRADVGGQF SKVQFDAKTS YPNEVLKFNH 360
361 GNYSHLMEKN RIRKLTGQNF LTSNISSLVR SCGEEEFFST NWLSIFNDFS NIKTSEWDLY 420
421 PQGFSSVERG RKRAHSLVST QSSSSTRSHE YGRKSFRNNK NDNYSSDMEN DNLLLNLEQI 480
481 NEDLEDGHYI EENSQGNILD FNLNLPPSSF GRSHTRNSTR SSGFNEDIVG ALRRRVGPSE 540
541 QNFAEEDDSS NSCFSDGSQQ NLQQDKTNFQ DVILDYQTKK FYDYIKERSI VVGRTTRSNP 600
601 PFKRKMLLVD IIPSRMGEAQ TGANFDDVER GVSRQIAASA FLSLLNLATK GMVKLNEYPV 660
661 ADAVTKDLKL RREDEIIVYA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [206-297] |
1 11 21 31 41 51
| | | | | |
1 GDMTNSDAQS NLGSNVRNSF PLDEIPVDVD FNLDLDDIVS HQGTPLGSHS SSQKDGNDFK 60
61 FNYQGDELVL NFENDNENNS NGGEDTSVEN EG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [298-549] |
1 11 21 31 41 51
| | | | | |
1 PVANLKDYEL GLEAQASEEE NDLQQKLNTR MQRGHRADVG GQFSKVQFDA KTSYPNEVLK 60
61 FNHGNYSHLM EKNRIRKLTG QNFLTSNISS LVRSCGEEEF FSTNWLSIFN DFSNIKTSEW 120
121 DLYPQGFSSV ERGRKRAHSL VSTQSSSSTR SHEYGRKSFR NNKNDNYSSD MENDNLLLNL 180
181 EQINEDLEDG HYIEENSQGN ILDFNLNLPP SSFGRSHTRN STRSSGFNED IVGALRRRVG 240
241 PSEQNFAEED DS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [550-680] |
1 11 21 31 41 51
| | | | | |
1 SNSCFSDGSQ QNLQQDKTNF QDVILDYQTK KFYDYIKERS IVVGRTTRSN PPFKRKMLLV 60
61 DIIPSRMGEA QTGANFDDVE RGVSRQIAAS AFLSLLNLAT KGMVKLNEYP VADAVTKDLK 120
121 LRREDEIIVY A
|
| Detection Method: | |
| Confidence: | 2.06 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.43291559958598 | bayes_pls_golite062009 |
| DNA binding | 3.3647397700181 | bayes_pls_golite062009 |
| nucleic acid binding | 3.2907348579166 | bayes_pls_golite062009 |
| binding | 3.2287204659268 | bayes_pls_golite062009 |
| transcription factor activity | 2.56149193357611 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.29833348412438 | bayes_pls_golite062009 |
| transcription activator activity | 1.12578574440827 | bayes_pls_golite062009 |
| transcription repressor activity | 0.975119185383629 | bayes_pls_golite062009 |
| protein binding | 0.933833716716586 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.815066484495067 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.685909148192434 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.516581502758384 | bayes_pls_golite062009 |
| DNA helicase activity | 0.295322409391238 | bayes_pls_golite062009 |
