| Protein: | USV1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 391 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USV1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..391] | [276..725] |
|
|
0.0 | [1..391] | [189..610] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MENTTNRNTA GVLTSSNGNF ATNSVAASTP KRSKSARRKT FKCTGYDGCT MSFTRAEHLA 60
61 RHIRKHTGEK PFQCPACLKF FSRVDNLKQH RESVHAHKNH HSTSSHQRKP SSSSL
|
| Detection Method: |  |
| Confidence: | 90.85005 |
| Match: | 1a1iA_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription activator activity | 3.52873291636993 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.53101891154822 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.790771220986801 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.53991278722671 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [116-171] |
1 11 21 31 41 51
| | | | | |
1 SSSSSASSSS SASSSTSYSD PYRKTNINSG NMPMMAENEK APQIIHSSPE FITSTR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [172-247] |
1 11 21 31 41 51
| | | | | |
1 SIPPISPRSI YNTQRQQQHQ QQQHQQAPYY FPSHPITDSY YQYPLPSNNN TINYLPSVDV 60
61 QYPLNVSPSS TSHPAS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.403 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.346 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.346 | N/A | N/A | a.135.1 | Tetraspanin |
| View | Download | 0.299 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.295 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.237 | N/A | N/A | d.205.1 | GTP cyclohydrolase I feedback regulatory protein, GFRP |
| View | Download | 0.226 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.205 | N/A | N/A | a.3.1 | Cytochrome c |
|
Region A: Residues: [248-308] |
1 11 21 31 41 51
| | | | | |
1 EVIISSFPPR SMPSTSFKYK DSADFQARTT MNKYNIRPSN INVNTSNINN HLDSFSPPFS 60
61 P
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.550 | N/A | N/A | d.9.2 | Description not found. |
| View | Download | 0.449 | N/A | N/A | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.415 | N/A | N/A | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.392 | N/A | N/A | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.370 | N/A | N/A | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.339 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.330 | N/A | N/A | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.264 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.262 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.254 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.242 | N/A | N/A | d.9.2 | Description not found. |
| View | Download | 0.241 | N/A | N/A | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.237 | N/A | N/A | b.35.2 | SacY-like RNA-binding domain |
| View | Download | 0.235 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.220 | N/A | N/A | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.215 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.201 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
|
Region A: Residues: [309-391] |
1 11 21 31 41 51
| | | | | |
1 STTVAEAKPI ILPQYQQAFS QPPNGNKNNN MSSSKNGGKG GENFKNTDDR NDNNNKKRSE 60
61 TLSESDISVN TNKKRLSVDY ILT
|
| Detection Method: | |
| Confidence: | 86.144602 |
| Match: | 2adr__ |
| Description: | ADR1 |
Matching Structure (courtesy of the PDB): |
|
