| Protein: | ECM23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 187 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM23.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-30 | [1..187] | [1..187] |
|
|
1.0E-25 | [14..185] | [42..217] |
|
|
1.0E-24 | [73..186] | [68..180] |
|
|
2.0E-24 | [11..185] | [95..278] |
|
|
5.0E-24 | [9..182] | [51..233] |
|
|
7.0E-24 | [3..174] | [168..342] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MLYNKEQGTS GASSSGRRTK FHFDRFVQMV LFIAANPNYC CSVASIPKSG VTPDLKRADI 60
61 LEQKIKSLNS ALSPKLKEES RLGGPLHNPS ILPAPSFSSL PISSNGKKSL AGYRPK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [117-187] |
1 11 21 31 41 51
| | | | | |
1 SRKKQTILPN GQPKECATCG DTWTSQWRSG PNGNVELCSR CGIAYRKKME KKIRSQQSSD 60
61 DGTKNFIFKN K
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 4gatA_ |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86425331852532 | bayes_pls_golite062009 |
| protein binding | 1.03915863262476 | bayes_pls_golite062009 |
| transcription regulator activity | 0.444271462960894 | bayes_pls_golite062009 |
| DNA binding | 0.286544225540259 | bayes_pls_golite062009 |
| nucleic acid binding | 0.153249001846128 | bayes_pls_golite062009 |
