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Protein Overview: ECM23

General Information:
Name(s) found: ECM23 / YPL021W [SGD]
Description(s) found:
Found 26 descriptions.
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  • Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 187 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pseudohyphal growth [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYNKEQGTS GASSSGRRTK FHFDRFVQMV LFIAANPNYC CSVASIPKSG VTPDLKRADI  60
   61 LEQKIKSLNS ALSPKLKEES RLGGPLHNPS ILPAPSFSSL PISSNGKKSL AGYRPKSRKK 120
  121 QTILPNGQPK ECATCGDTWT SQWRSGPNGN VELCSRCGIA YRKKMEKKIR SQQSSDDGTK 180
  181 NFIFKNK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] deduced N/A No confident structure predictions are available.
    2 View Details [117..187] PSI-BLAST 17.0 Erythroid transcription factor GATA-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.86425331852532 bayes_pls_golite062009
  • protein binding
    		•  1.03915863262476 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.444271462960894 bayes_pls_golite062009
  • DNA binding
    		•  0.286544225540259 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.153249001846128 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle