| Protein: | RDR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 546 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDR1.
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-84 | [1..546] | [1..546] |
|
|
6.0E-66 | [7..531] | [5..533] |
|
|
4.0E-62 | [2..531] | [35..604] |
|
|
7.0E-61 | [5..531] | [55..620] |
|
|
1.0E-57 | [3..531] | [25..583] |
|
|
5.0E-55 | [2..527] | [55..649] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MASPGSTALP HKRQRVRKAC VPCRERKRKC NGKSPCEMCV AYGYVCHYID GRVPSASPQV 60
61 QQVGETSPDT ESRPFVLPGI HRNEQPQPIN TQNVTSQNI
|
| Detection Method: |  |
| Confidence: | 36.0 |
| Match: | 1zmeC_ |
| Description: | PUT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.36540182658818 | bayes_pls_golite062009 |
| nucleic acid binding | 1.82012686871762 | bayes_pls_golite062009 |
| DNA binding | 1.78629392205727 | bayes_pls_golite062009 |
| transcription regulator activity | 1.70162817919532 | bayes_pls_golite062009 |
| transcription factor activity | 0.606922041618269 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.160255273911114 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0882387940255902 | bayes_pls_golite062009 |
|
Region A: Residues: [100-546] |
1 11 21 31 41 51
| | | | | |
1 VDPTKSRYTI QHSAVAFPRC LGLELRSTNP PRLHSFAWHC GIRPEENPNS HVLLSDLVTK 60
61 EEYYRISKVY FSVVHPIFDV VNPEQLAKNV EKYWDGDVKT LEYGAVIAGV IALGSFFMGS 120
121 LGHPREMDIV QYAKGILDDP TFSRIPTVEQ VSAWVLRTIY LRATSRPHVA WLASCVTIHL 180
181 SEAIGLHHEI DREDIAISNN VPPKRTTVVS EHTRRLFWCA WSINTILSYD YGRSSVTLNR 240
241 ITCKPVKETD GNFTAHLVAL AHLIPQDSVN ANAAQLLQAL AAVHESPNAH PFLSLTKGDI 300
301 CLSLYRRLRL LNHILDKNVV LQIIDIGNTA LSAAYALVKL DQAWWNVLST SFQYVCVLLA 360
361 IDTPESLSHV ATAMKTLDNI TQILGTRIAF EAQKTAKLLL EDSMKKKRQE IQQLEQATHQ 420
421 RSNLETTHLL DIDWDALLDP SDTLNFM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [223-351] |
1 11 21 31 41 51
| | | | | |
1 PREMDIVQYA KGILDDPTFS RIPTVEQVSA WVLRTIYLRA TSRPHVAWLA SCVTIHLSEA 60
61 IGLHHEIDRE DIAISNNVPP KRTTVVSEHT RRLFWCAWSI NTILSYDYGR SSVTLNRITC 120
121 KPVKETDGN
|
| Detection Method: | |
| Confidence: | 19.568636 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.592 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.462 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.458 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.443 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.396 | N/A | N/A | a.1.1 | Globin-like |
|
Region A: Residues: [352-546] |
1 11 21 31 41 51
| | | | | |
1 FTAHLVALAH LIPQDSVNAN AAQLLQALAA VHESPNAHPF LSLTKGDICL SLYRRLRLLN 60
61 HILDKNVVLQ IIDIGNTALS AAYALVKLDQ AWWNVLSTSF QYVCVLLAID TPESLSHVAT 120
121 AMKTLDNITQ ILGTRIAFEA QKTAKLLLED SMKKKRQEIQ QLEQATHQRS NLETTHLLDI 180
181 DWDALLDPSD TLNFM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
