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Protein Overview: SPBC1683.13c

General Information:
Name(s) found: SPBC1683.13c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMKPRQDKK NQEIFRISCQ RCRQRKIKCD RLHPCFQCVK SNSQCFYPED PIRRRAPKEY  60
   61 VEALERQIAF FEAFVKKLAK VGSDEQSLMI QDMNNKIVNE GNEYDQTPDI SARKRRKHFR 120
  121 MLPQNNFRYF QFYGTTNVIS ASNLTTTSEI PTFKFPIFSK RKYNDTENLY EQPFHLEFDT 180
  181 CQELLSLFFL KQYHNFMFVF RDYFIRDFEL GGGPYYSQWL LFAICSIGAM ISPDDDLKNL 240
  241 SNTLANIAEK WVLDEGLNSP DITTLQTLLV LGIREIGRGL TFKGWLFSGM AFRLVYDMGL 300
  301 HLDPDHWDHS EESRIDREVR RRCFWGCFTL DKLISLCYGR PPGLYLKQTD VRNTTQLPYI 360
  361 SELDEPFEIF NKKSELFAAV SAGEDRRGLV QFWLNQVELC KIIHRMLTEV FEDRTSSVLE 420
  421 ASINNIHTEL QKWIADIPME LQWNTRSQKE TSSTVLLLHM LYHSVIIILN RPSDDNYLKL 480
  481 DNTERYTFEI CWKSAKTIVQ LLKIYFKKYD ADCLPMTFIH IATSAARIIL VKLNENIPED 540
  541 GDVCNIYLEI ITNALDVCAN VWPLASQASR AILNAYKSCA TSPKENNEDS LPLQRSPSLD 600
  601 DVSRFDSLDY IFSPNVKY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 3.09691 Gal4; CD2-Gal4
    2 View Details [149..275] deduced N/A No confident structure predictions are available.
    3 View Details [276..350] Pfam 33.920819 No description for PF04082.9 was found. No confident structure predictions are available.
    4 View Details [351..469] deduced N/A No confident structure predictions are available.
    5 View Details [470..618] MSA 5.366997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.03201524223606 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.86200506906385 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle