| Protein: | YRM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 786 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..786] | [1..786] |
|
|
1.0E-80 | [25..635] | [5..553] |
|
|
5.0E-69 | [5..618] | [35..630] |
|
|
1.0E-68 | [21..583] | [14..564] |
|
|
2.0E-68 | [21..565] | [14..549] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MSKRGSLQDR ASPSEETVKK AQKRRKPIKS CAFCRKRKLR CDQQKPMCST CKTRGRSGCL 60
61 YTEKFTHKIE TKELFGSTPN IELLKRIEDL EKRLDDKELT
|
| Detection Method: |  |
| Confidence: | 70.228787 |
| Match: | 1hwtD_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [101-556] |
1 11 21 31 41 51
| | | | | |
1 EKDVALSTSP FRNPYANFYY LQCKGSGRRI VYGPTSLRTH LSNDDNRFVN TYNQLWSKVK 60
61 IERNRWKARH KWTMKPETQL LEGPPLEKTG SDILQQVCNV LPSFEQSSKI ITDFFNTELE 120
121 TNEVSEVLDK TKIINDFTSS FLPSDELLPN GERRIEKLLP STKKNYYKIG VILMILCIRH 180
181 FYKNTPEEIE KFLIMLTGLS TAKVYFIERA QFLLLKYYHR ELIWACGDDS HMISLVDLLC 240
241 STAIMLGLHL NIREIYKNQE NIVGSMESLE NLWVWIILSD FNVSLNIGRC LAINSSYFQV 300
301 DECENGERLP KNTNNYSSTV FFDQSNSCMG KLKRFLRLAR PMLDQIYDRS AFPDLAENCK 360
361 KLRNFVETEF HPISYYTDSE LISKVPLCEI KVLAQVLNLL LTFYSLRYLI YKEKSVVLEN 420
421 NILQTILVSF SLVINTTILC FNLDEKHFPE FFDHNC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [557-786] |
1 11 21 31 41 51
| | | | | |
1 VHLPPFMALS LVYTNFLFPR ASTGFCAFLY HKLTLFEKGY YLSSNIKDQE VTDWDLSTLN 60
61 IPLDKAMNLL TAFKIHSDIF AKWSNDNNKQ LRIIMARSYT FVINIALESI YRAVLEKVIK 120
121 YRTEVENTWL QQLQDELNGS YSLTDNVNTP IDPSLSDLGV TSASPLAGNS PGLPPEEVRN 180
181 NSENASHNNE TGPIETELAQ TISNEFWTAY NLGWEELMSQ PDYKYLFDTQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
