| Protein: | LCB4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 624 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCB4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..624] | [1..624] |
|
|
0.0 | [99..615] | [12..613] |
|
|
5.0E-90 | [135..615] | [97..641] |
|
|
8.0E-84 | [139..614] | [29..451] |
|
|
4.0E-81 | [223..611] | [25..377] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MVVQKKLRAI LTDEGVLIKS QSHHMFNKHG QLRSGDSLSL LSCLSCLDDG TLSSDGGSFD 60
61 EDDSLELLPL NTTIPFNRIL NAKYVNVGQK GFNNGKISSN PFQTENLSSS SENDDVENHS 120
121 LSNDKAPVSE SQSFPKKDKW DTKTNTVKVS PDDSQDNSPS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [161-367] |
1 11 21 31 41 51
| | | | | |
1 LGIKDNQQLI ELTFAVPKGH DVIPQKLTLL IDHVSRKSRA NTGEENISSG TVEEILEKSY 60
61 ENSKRNRSIL VIINPHGGKG TAKNLFLTKA RPILVESGCK IEIAYTKYAR HAIDIAKDLD 120
121 ISKYDTIACA SGDGIPYEVI NGLYRRPDRV DAFNKLAVTQ LPCGSGNAMS ISCHWTNNPS 180
181 YAALCLVKSI ETRIDLMCCS QPSYMNE
|
| Detection Method: | |
| Confidence: | 7.4 |
| Match: | 1kq3A |
| Description: | Glycerol dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [368-428] |
1 11 21 31 41 51
| | | | | |
1 WPRLSFLSQT YGVIAESDIN TEFIRWMGPV RFNLGVAFNI IQGKKYPCEV FVKYAAKSKK 60
61 E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.329 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.310 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.292 | d.58.48 | MTH1187-like |
| View | Download | 0.499 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.383 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.289 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.282 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.280 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.276 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.276 | g.59.1 | Zinc-binding domain of translation initiation factor 2 beta |
| View | Download | 0.262 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.239 | d.109.1 | Actin depolymerizing proteins |
| Term | Confidence | Notes |
| kinase activity | 2.76633393386992 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 2.49560915337842 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.43985991144271 | bayes_pls_golite062009 |
| transferase activity | 1.63159199531284 | bayes_pls_golite062009 |
| catalytic activity | 0.33446102778142 | bayes_pls_golite062009 |
|
Region A: Residues: [429-624] |
1 11 21 31 41 51
| | | | | |
1 LKVHFLENKD KNKGCLTFEP NPSPNSSPDL LSKNNINNST KDELSPNFLN EDNFKLKYPM 60
61 TEPVPRDWEK MDSELTDNLT IFYTGKMPYI AKDTKFFPAA LPADGTIDLV ITDARIPVTR 120
121 MTPILLSLDK GSHVLEPEVI HSKILAYKII PKVESGLFSV DGEKFPLEPL QVEIMPMLCK 180
181 TLLRNGRYID TEFESM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
