| Protein: | RAT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1006 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..993] | [1..981] |
|
|
0.0 | [1..1000] | [1..986] |
|
|
0.0 | [1..998] | [1..962] |
|
|
0.0 | [1..1006] | [1..1006] |
|
|
0.0 | [1..895] | [1..888] |
|
Region A: Residues: [1-271] |
1 11 21 31 41 51
| | | | | |
1 MGVPSFFRWL SRKYPKIISP VLEEQPQIVD GVILPLDYSA SNPNGELDNL YLDMNGIVHP 60
61 CSHPENKPPP ETEDEMLLAV FEYTNRVLNM ARPRKVLVMA VDGVAPRAKM NQQRARRFRS 120
121 ARDAQIENEA REEIMRQREE VGEIIDDAVR NKKTWDSNAI TPGTPFMDKL AAALRYWTAF 180
181 KLATDPGWKN LQVIISDATV PGEGEHKIMN FIRSQRADPE YNPNTTHCIY GLDADLIFLG 240
241 LATHEPHFKI LREDVFAQDN RKRNNLKDTI N
|
| Detection Method: |  |
| Confidence: | 188.481486 |
| Match: | PF03159 |
| Description: | XRN 5'-3' exonuclease N-terminus |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [272-678] |
1 11 21 31 41 51
| | | | | |
1 MTEEEKQFLQ KQNSEQPFLW LHINVLREYL SAELWVPGLP FTFDLERAID DWVFMCFFCG 60
61 NDFLPHLPCL DVRENSIDIL LDIWKVVLPK LKTYMTCDGV LNLPSVETLL QHLGSREGDI 120
121 FKTRHIQEAR KKEAFERRKA QKNMSKGQDR HPTVATEQLQ MYDTQGNLAK GSWNLTTSDM 180
181 VRLKKELMLA NEGNEEAIAK VKQQSDKNNE LMKDISKEEI DDAVSKANKT NFNLAEVMKQ 240
241 KIINKKHRLE KDNEEEEIAK DSKKVKTEKA ESECDLDAEI KDEIVADVND RENSETTEVS 300
301 RDSPVHSTVN VSEGPKNGVF DTDEFVKLFE PGYHERYYTA KFHVTPQDIE QLRKDMVKCY 360
361 IEGVAWVLMY YYQGCASWNW FYPYHYAPLA TDFHGFSHLE IKFEEGT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.520 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.489 | c.55.4 | Translational machinery components |
| View | Download | 0.472 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.469 | d.15.1 | Ubiquitin-like |
| View | Download | 0.435 | d.93.1 | SH2 domain |
|
Region A: Residues: [679-789] |
1 11 21 31 41 51
| | | | | |
1 PFLPYEQLMS VLPAASGHAL PKIFRSLMSE PDSEIIDFYP EEFPIDMNGK KMSWQGIALL 60
61 PFIDQDRLLT AVRAQYPLLS DAERARNIRG EPVLLISNKN ANYERFSKKL Y
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.402 | 0.673 | RNA processing | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.292 | 0.002 | RNA processing | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.265 | 0.000 | RNA processing | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.331 | 0.000 | RNA processing | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.319 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.252 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.243 | N/A | N/A | a.74.1 | Cyclin-like |
|
Region A: Residues: [790-880] |
1 11 21 31 41 51
| | | | | |
1 SKENNNNNVV VKFQHFKSGL SGIVSKDVEG FELNGKIVCP IQGGSLPNLS TTLILKMSYR 60
61 LIPLPSRNKS IILNGFIPSE PVLTAYDLDS I
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.469 | d.15.1 | Ubiquitin-like |
| View | Download | 0.435 | d.93.1 | SH2 domain |
| View | Download | 0.472 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.489 | c.55.4 | Translational machinery components |
| View | Download | 0.520 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.431 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.394 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.391 | b.2.2 | Carbohydrate-binding domain |
| View | Download | 0.354 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.277 | b.55.1 | PH domain-like |
| View | Download | 0.249 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.244 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.231 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.231 | b.1.1 | Immunoglobulin |
| View | Download | 0.213 | b.89.1 | Cyanovirin-N |
| View | Download | 0.203 | d.54.1 | Enolase N-terminal domain-like |
|
Region A: Residues: [881-1006] |
1 11 21 31 41 51
| | | | | |
1 MYKYNNQNYS RRWNFGNDLK QNIVPVGPKG ITQYKPRTGG YRAFFYFAEL SRNNVQPAHN 60
61 YGRNSYNSQP GFNNSRYDGG NNNYRQNSNY RNNNYSGNRN SGQYSGNSYS RNNKQSRYDN 120
121 SRANRR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.243 | 0.070 | nucleus | a.74.1 | Cyclin-like |
