| Protein: | RAT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1006 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..993] | [1..981] |
|
|
0.0 | [1..1000] | [1..986] |
|
|
0.0 | [1..998] | [1..962] |
|
|
0.0 | [1..1006] | [1..1006] |
|
|
0.0 | [1..895] | [1..888] |
|
Region A: Residues: [1-271] |
1 11 21 31 41 51
| | | | | |
1 MGVPSFFRWL SRKYPKIISP VLEEQPQIVD GVILPLDYSA SNPNGELDNL YLDMNGIVHP 60
61 CSHPENKPPP ETEDEMLLAV FEYTNRVLNM ARPRKVLVMA VDGVAPRAKM NQQRARRFRS 120
121 ARDAQIENEA REEIMRQREE VGEIIDDAVR NKKTWDSNAI TPGTPFMDKL AAALRYWTAF 180
181 KLATDPGWKN LQVIISDATV PGEGEHKIMN FIRSQRADPE YNPNTTHCIY GLDADLIFLG 240
241 LATHEPHFKI LREDVFAQDN RKRNNLKDTI N
|
| Detection Method: |  |
| Confidence: | 188.481486 |
| Match: | PF03159 |
| Description: | XRN 5'-3' exonuclease N-terminus |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [272-678] |
1 11 21 31 41 51
| | | | | |
1 MTEEEKQFLQ KQNSEQPFLW LHINVLREYL SAELWVPGLP FTFDLERAID DWVFMCFFCG 60
61 NDFLPHLPCL DVRENSIDIL LDIWKVVLPK LKTYMTCDGV LNLPSVETLL QHLGSREGDI 120
121 FKTRHIQEAR KKEAFERRKA QKNMSKGQDR HPTVATEQLQ MYDTQGNLAK GSWNLTTSDM 180
181 VRLKKELMLA NEGNEEAIAK VKQQSDKNNE LMKDISKEEI DDAVSKANKT NFNLAEVMKQ 240
241 KIINKKHRLE KDNEEEEIAK DSKKVKTEKA ESECDLDAEI KDEIVADVND RENSETTEVS 300
301 RDSPVHSTVN VSEGPKNGVF DTDEFVKLFE PGYHERYYTA KFHVTPQDIE QLRKDMVKCY 360
361 IEGVAWVLMY YYQGCASWNW FYPYHYAPLA TDFHGFSHLE IKFEEGT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [679-789] |
1 11 21 31 41 51
| | | | | |
1 PFLPYEQLMS VLPAASGHAL PKIFRSLMSE PDSEIIDFYP EEFPIDMNGK KMSWQGIALL 60
61 PFIDQDRLLT AVRAQYPLLS DAERARNIRG EPVLLISNKN ANYERFSKKL Y
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [790-880] |
1 11 21 31 41 51
| | | | | |
1 SKENNNNNVV VKFQHFKSGL SGIVSKDVEG FELNGKIVCP IQGGSLPNLS TTLILKMSYR 60
61 LIPLPSRNKS IILNGFIPSE PVLTAYDLDS I
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [881-1006] |
1 11 21 31 41 51
| | | | | |
1 MYKYNNQNYS RRWNFGNDLK QNIVPVGPKG ITQYKPRTGG YRAFFYFAEL SRNNVQPAHN 60
61 YGRNSYNSQP GFNNSRYDGG NNNYRQNSNY RNNNYSGNRN SGQYSGNSYS RNNKQSRYDN 120
121 SRANRR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
