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View Structure Prediction Details

Protein: RPS19A
Organism: Saccharomyces cerevisiae
Length: 144 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS19A.

Description E-value Query
Range		 Subject
Range
gi|109124930, gi... - gi|109124930|ref|XP_001103598.1| PREDICTED: similar to ribosomal protein S19 isoform 1 [Macaca mulat...
RS19_PONAB - 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3
RPS19 - ribosomal protein S19
CCDS12588.1_1 - null
gi|149722178 - gi|149722178|ref|XP_001501616.1| PREDICTED: similar to ribosomal protein S19 [Equus caballus]
gi|149410258 - gi|149410258|ref|XP_001509109.1| PREDICTED: similar to S19 ribosomal protein [Ornithorhynchus anatin...
gi|164507151 - gi|164507151|gb|ABY59788.1| ribosomal protein S19 [Ailuropoda melanoleuca]
ENSPTRT00000020505 - null
gi|157928282, gi... - gi|60656401|gb|AAX32764.1| ribosomal protein S19 [synthetic construct], gi|157928282|gb|ABW03437.1| ...
gi|90076586, gi|... - gi|90076586|dbj|BAE87973.1| unnamed protein product [Macaca fascicularis], gi|90075572|dbj|BAE87466....
RS19_BOVIN - 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3
gi|126344107 - gi|126344107|ref|XP_001363730.1| PREDICTED: similar to novel lectin C-type domain containing protein...
RS19_PONPY - 40S ribosomal protein S19 - Pongo pygmaeus (Orangutan)
 4.0E-64 [1..144] [1..143]
RS19_MOUSE - 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3
RS19_RAT - 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3
gi|57716 - gi|57716|emb|CAA36003.1| unnamed protein product [Rattus rattus]
 6.0E-64 [1..144] [1..143]
RS19_ICTPU - 40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1
 5.0E-63 [1..141] [1..142]
RS19_PIG - 40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3
 1.0E-62 [1..137] [1..136]
RS19_GILMI - 40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1
 2.0E-61 [1..139] [1..138]
RS19B_SCHPO - 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1902 PE=3 S...
rps1902 - 40S ribosomal protein S19
 2.0E-61 [1..144] [1..143]
RS19_MYAAR - 40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1
 7.0E-60 [3..140] [2..138]
RS19_MYXGL - 40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1
 2.0E-59 [1..140] [1..139]

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Predicted Domain #1
Region A:
Residues: [1-144] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVSVRDVA AQDFINAYAS FLQRQGKLEV PGYVDIVKTS SGNEMPPQDA EGWFYKRAAS  60
   61 VARHIYMRKQ VGVGKLNKLY GGAKSRGVRP YKHIDASGSI NRKVLQALEK IGIVEISPKG 120
  121 GRRISENGQR DLDRIAAQTL EEDE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 99.638272
Match: PF01090
Description: Ribosomal protein S19e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.29433336630028 bayes_pls_golite062009
structural molecule activity 5.07265721693681 bayes_pls_golite062009
transcription regulator activity 4.44907471960058 bayes_pls_golite062009
nucleic acid binding 3.97631536825798 bayes_pls_golite062009
DNA binding 3.93431504495991 bayes_pls_golite062009
binding 3.52874320222492 bayes_pls_golite062009
transcription factor activity 3.48782936574155 bayes_pls_golite062009
sequence-specific DNA binding 2.44917636781125 bayes_pls_golite062009
transcription activator activity 2.35901958718112 bayes_pls_golite062009
RNA binding 1.88227222208129 bayes_pls_golite062009
protein binding 1.80415286835431 bayes_pls_golite062009
transcription repressor activity 1.54960543048317 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.2152419300113 bayes_pls_golite062009
transcription factor binding 0.13558561552621 bayes_pls_golite062009
ligase activity 0.104213649382856 bayes_pls_golite062009
mRNA binding 0.036043970189533 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle