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View Structure Prediction Details

Protein: RPS19A
Organism: Saccharomyces cerevisiae
Length: 144 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS19A.

Description E-value Query
Range		 Subject
Range
gi|109124930, gi... - gi|109124930|ref|XP_001103598.1| PREDICTED: similar to ribosomal protein S19 isoform 1 [Macaca mulat...
RS19_PONAB - 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3
RPS19 - ribosomal protein S19
CCDS12588.1_1 - null
gi|149722178 - gi|149722178|ref|XP_001501616.1| PREDICTED: similar to ribosomal protein S19 [Equus caballus]
gi|149410258 - gi|149410258|ref|XP_001509109.1| PREDICTED: similar to S19 ribosomal protein [Ornithorhynchus anatin...
gi|164507151 - gi|164507151|gb|ABY59788.1| ribosomal protein S19 [Ailuropoda melanoleuca]
ENSPTRT00000020505 - null
gi|157928282, gi... - gi|60656401|gb|AAX32764.1| ribosomal protein S19 [synthetic construct], gi|157928282|gb|ABW03437.1| ...
gi|90076586, gi|... - gi|90076586|dbj|BAE87973.1| unnamed protein product [Macaca fascicularis], gi|90075572|dbj|BAE87466....
RS19_BOVIN - 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3
gi|126344107 - gi|126344107|ref|XP_001363730.1| PREDICTED: similar to novel lectin C-type domain containing protein...
RS19_PONPY - 40S ribosomal protein S19 - Pongo pygmaeus (Orangutan)
 4.0E-64 [1..144] [1..143]
RS19_MOUSE - 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3
RS19_RAT - 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3
gi|57716 - gi|57716|emb|CAA36003.1| unnamed protein product [Rattus rattus]
 6.0E-64 [1..144] [1..143]
RS19_ICTPU - 40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1
 5.0E-63 [1..141] [1..142]
RS19_PIG - 40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3
 1.0E-62 [1..137] [1..136]
RS19_GILMI - 40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1
 2.0E-61 [1..139] [1..138]
RS19B_SCHPO - 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1902 PE=3 S...
rps1902 - 40S ribosomal protein S19
 2.0E-61 [1..144] [1..143]
RS19_MYAAR - 40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1
 7.0E-60 [3..140] [2..138]
RS19_MYXGL - 40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1
 2.0E-59 [1..140] [1..139]

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Predicted Domain #1
Region A:
Residues: [1-144] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVSVRDVA AQDFINAYAS FLQRQGKLEV PGYVDIVKTS SGNEMPPQDA EGWFYKRAAS  60
   61 VARHIYMRKQ VGVGKLNKLY GGAKSRGVRP YKHIDASGSI NRKVLQALEK IGIVEISPKG 120
  121 GRRISENGQR DLDRIAAQTL EEDE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 99.638272
Match: PF01090
Description: Ribosomal protein S19e

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.29433336630028 bayes_pls_golite062009
structural molecule activity 5.07265721693681 bayes_pls_golite062009
transcription regulator activity 4.44907471960058 bayes_pls_golite062009
nucleic acid binding 3.97631536825798 bayes_pls_golite062009
DNA binding 3.93431504495991 bayes_pls_golite062009
binding 3.52874320222492 bayes_pls_golite062009
transcription factor activity 3.48782936574155 bayes_pls_golite062009
sequence-specific DNA binding 2.44917636781125 bayes_pls_golite062009
transcription activator activity 2.35901958718112 bayes_pls_golite062009
RNA binding 1.88227222208129 bayes_pls_golite062009
protein binding 1.80415286835431 bayes_pls_golite062009
transcription repressor activity 1.54960543048317 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.2152419300113 bayes_pls_golite062009
transcription factor binding 0.13558561552621 bayes_pls_golite062009
ligase activity 0.104213649382856 bayes_pls_golite062009
mRNA binding 0.036043970189533 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle