| Protein: | HAL9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1030 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAL9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1030] | [1..1030] |
|
|
2.0E-86 | [90..801] | [7..635] |
|
|
4.0E-86 | [62..804] | [1..653] |
|
|
7.0E-82 | [83..780] | [1..645] |
|
|
1.0E-76 | [101..804] | [7..616] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MENQGGDYSP NGFSNSASNM NAVFNNEITG RSDISNVNHQ TGTPRLVPET QIWSMPVPDQ 60
61 LMTMPNRENT LMTGSTIGPN IPMNVAYPNT IYSPTEHQSQ FQTQQNRDIS T
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [112-193] |
1 11 21 31 41 51
| | | | | |
1 MMEHTNSNDM SGSGKNLKKR VSKACDHCRK RKIRCDEVDQ QTKKCSNCIK FQLPCTFKHR 60
61 DEILKKKRKL EIKHHATPGE SL
|
| Detection Method: | |
| Confidence: | 29.37734 |
| Match: | 2alcA_ |
| Description: | Ethanol regulon transcriptional activator ALCR DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.01653715768897 | bayes_pls_golite062009 |
| nucleic acid binding | 3.75642497789214 | bayes_pls_golite062009 |
| binding | 3.44246337929443 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| transcription factor activity | 2.84476696728644 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.79090232026007 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [194-284] |
1 11 21 31 41 51
| | | | | |
1 QTSNSISNPV ASSSVPNSGR FELLNGNSPL ESNIIDKVSN IQNNLNKKMN SKIEKLDRKM 60
61 SYIIDSVARL EWLLDKAVKK QEGKYKEKNN L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.830 | 0.057 | response to salt stress | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
|
Region A: Residues: [285-581] |
1 11 21 31 41 51
| | | | | |
1 PKPARKIYST ALLTAQKLYW FKQSLGVKAS NEEFLSPISE ILSISLKWYA TQMKKFMDLS 60
61 SPAFFSSEII LYSLPPKKQA KRLLENFHAT LLSSVTGIIS LKECLDLAEK YYSESGEKLT 120
121 YPEHLLLNVC LCSGASATQS IIRGDSKFLR KDRYDPTSQE LKKIENVALL NAMYYYHKLS 180
181 TICSGTRTLQ ALLLLNRYFQ LTYDTELANC ILGTAIRLAV DMELNRKSSY KSLDFEEAIR 240
241 RRRMWWHCFC TDKLYSLMLS RPPIVGERDM DMLTDQNYYE VIKTNILPDL IDKKEDL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [582-806] |
1 11 21 31 41 51
| | | | | |
1 DKITDVNSAL NVVVNFCQHI SLFISYYVSK LVSIESKIYS TCFAVRSTLD LSFDAMLDKI 60
61 KDLNDSLNNW RDNLHVSMKL KSYKQYLSVL YAQKSQENPA LSFEIACSRV LNCHFRALYS 120
121 KVILSMMTTS LLIDNERLYK GSRHDIPQLF ILFSSQYLNA SKEMLQLFQG INYQAHMYNE 180
181 VMYQFSTAMF VLFFYVVDNM NDLKKKGEVK EIIDILKKSY DRLVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [807-1030] |
1 11 21 31 41 51
| | | | | |
1 ENDEQLLFDN VKWNTLIVFY SHFLKYVLQR YHALNDSTSI FDSKPYDETI TKVIMHSRKI 60
61 KDETVDQLIM SLKSYGSLHS LQKGNEADLA DDGLNTNDIS SEDFAEEAPI NLFGELSVEI 120
121 LKLLKSHSPI SNFGDLSPSS NRKGISDDSS LYPIRSDLTS LVYPIHSSDT GDTLSSGLET 180
181 PENSNFNSDS GIKEDFEAFR ALLPLGKLIY DRDYSFVNTF RDYE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [849-1030] |
1 11 21 31 41 51
| | | | | |
1 SKPYDETITK VIMHSRKIKD ETVDQLIMSL KSYGSLHSLQ KGNEADLADD GLNTNDISSE 60
61 DFAEEAPINL FGELSVEILK LLKSHSPISN FGDLSPSSNR KGISDDSSLY PIRSDLTSLV 120
121 YPIHSSDTGD TLSSGLETPE NSNFNSDSGI KEDFEAFRAL LPLGKLIYDR DYSFVNTFRD 180
181 YE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
