YRC Public Data Repository - Protein Structure Prediction

Protein:	DMA2
Organism:	Saccharomyces cerevisiae
Length:	522 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DMA2.

Description	E-value	Query Range	Subject Range
gi\|9758583, gi\|2... - gi\|9758583\|dbj\|BAB09196.1\| unnamed protein product [Arabidopsis thaliana], gi\|28416527\|gb\|AAO42794.1...	215.0	[0..9]	[478..245]
DMA1 - Protein involved in ubiquitin ligation; plays a role in regulating spindle position and orientation;... DMA1_YEAST - E3 ubiquitin-protein ligase DMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA1 PE... gi\|190405894 - gi\|190405894\|gb\|EDV09161.1\| hypothetical protein SCRG_04828 [Saccharomyces cerevisiae RM11-1a]	208.0	[0..96]	[484..1]
PJA1_MOUSE - (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)	182.0	[0..22]	[482..117]
gi\|76659189, gi\|... - gi\|76659189\|ref\|XP_589983.2\| PREDICTED: similar to E3 ubiquitin-protein ligase RNF12 (RING finger pr...	180.0	[0..27]	[483..146]
gi\|114649076 - gi\|114649076\|ref\|XP_001156121.1\| PREDICTED: ring finger protein 6 isoform 2 [Pan troglodytes]	177.0	[0..2]	[484..167]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTPIPANTP APTAPTSSMT SNSSSASNAN TTSSSGINPR NRASGTPSNE RARPASGISS  60
   61 FLNTFGIRQN SQTASSSAAP DQRLFGTTPS NSHMSVAMES IDTAPQQQEP RLHHPIQMPL 120
  121 SAQFHVHRNY QLPISISLTA PTTTDHQQSS AHNFEGNNVG NVQESLNQRQ PNGTNNTTTS 180
  181 IISMAPAATT RNIVGGADGS TIVNNSQEMY KNLRHLIYAA NQPNGTEILH LDLP

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	13.71
Match:
Description:	No description for 1ldvA was found.

Predicted Domain #2

Region A:
Residues: [235-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATSAEESNNM FNVDEVTLKQ RKDKHGLFSI RLTPFIDSSS TTNQGLFFEP IIRKAGPGSQ  60
   61 LVIGRYTERV R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [306-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAISKIPEQY HPVVFKSKVV SRTHGCFKVD SQGNWYIKDV KSSSGTFLNH QRLSPASSLS  60
   61 KDTPLRDGDI LQLGMDFRGG TEEIYRCVRM RIELNRSWKL KAN

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	11.24
Match:
Description:	No description for 1g3gA was found.

Predicted Domain #4

Region A:
Residues: [409-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNKEALQRL QNLQKLTTGI EEEDCSICLC KIKPCQAIFI SPCAHSWHFR CVRRLVMLSY  60
   61 PQFVCPNCRS SCDLEASFES SDEEDESDVE SEGDQLVDQL SVLMETSKDV DSHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.30103
Match:	1chcA
Description:	STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits