YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DMA2
Organism: Saccharomyces cerevisiae
Length: 522 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DMA2.

Description E-value Query
Range
Subject
Range
gi|9758583, gi|2... - gi|9758583|dbj|BAB09196.1| unnamed protein product [Arabidopsis thaliana], gi|28416527|gb|AAO42794.1...
215.0 [0..9] [478..245]
DMA1 - Protein involved in ubiquitin ligation; plays a role in regulating spindle position and orientation;...
DMA1_YEAST - E3 ubiquitin-protein ligase DMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA1 PE...
gi|190405894 - gi|190405894|gb|EDV09161.1| hypothetical protein SCRG_04828 [Saccharomyces cerevisiae RM11-1a]
208.0 [0..96] [484..1]
PJA1_MOUSE - (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)
182.0 [0..22] [482..117]
gi|76659189, gi|... - gi|76659189|ref|XP_589983.2| PREDICTED: similar to E3 ubiquitin-protein ligase RNF12 (RING finger pr...
180.0 [0..27] [483..146]
gi|114649076 - gi|114649076|ref|XP_001156121.1| PREDICTED: ring finger protein 6 isoform 2 [Pan troglodytes]
177.0 [0..2] [484..167]

Back

Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTPIPANTP APTAPTSSMT SNSSSASNAN TTSSSGINPR NRASGTPSNE RARPASGISS  60
   61 FLNTFGIRQN SQTASSSAAP DQRLFGTTPS NSHMSVAMES IDTAPQQQEP RLHHPIQMPL 120
  121 SAQFHVHRNY QLPISISLTA PTTTDHQQSS AHNFEGNNVG NVQESLNQRQ PNGTNNTTTS 180
  181 IISMAPAATT RNIVGGADGS TIVNNSQEMY KNLRHLIYAA NQPNGTEILH LDLP

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.71
Match:
Description: No description for 1ldvA was found.

Predicted Domain #2
Region A:
Residues: [235-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATSAEESNNM FNVDEVTLKQ RKDKHGLFSI RLTPFIDSSS TTNQGLFFEP IIRKAGPGSQ  60
   61 LVIGRYTERV R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.432 b.34.5 Translation proteins SH3-like domain
View Download 0.432 b.34.5 Translation proteins SH3-like domain
View Download 0.421 d.129.6 Description not found.
View Download 0.372 a.60.16 Description not found.
View Download 0.356 c.51.3 B12-dependend dehydatases associated subunit
View Download 0.355 b.34.5 Translation proteins SH3-like domain
View Download 0.306 d.58.24 CheY-binding domain of CheA
View Download 0.289 d.74.3 RBP11-like subunits of RNA polymerase

Predicted Domain #3
Region A:
Residues: [306-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAISKIPEQY HPVVFKSKVV SRTHGCFKVD SQGNWYIKDV KSSSGTFLNH QRLSPASSLS  60
   61 KDTPLRDGDI LQLGMDFRGG TEEIYRCVRM RIELNRSWKL KAN

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 11.24
Match:
Description: No description for 1g3gA was found.

Predicted Domain #4
Region A:
Residues: [409-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNKEALQRL QNLQKLTTGI EEEDCSICLC KIKPCQAIFI SPCAHSWHFR CVRRLVMLSY  60
   61 PQFVCPNCRS SCDLEASFES SDEEDESDVE SEGDQLVDQL SVLMETSKDV DSHP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 1chcA
Description: STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle