| Protein: | APJ1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 528 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APJ1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..528] | [1..528] |
|
|
3.0E-85 | [1..450] | [1..380] |
|
|
1.0E-79 | [1..333] | [1..346] |
|
|
1.0E-78 | [1..333] | [1..346] |
|
|
2.0E-78 | [4..376] | [91..460] |
|
|
4.0E-78 | [4..333] | [2..345] |
|
|
2.0E-77 | [6..373] | [93..457] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MQQNTSLYDS LNVTAAASTS EIKKAYRNAA LKYHPDKNNH TEESKRKFQE ICQAYEILKD 60
61 NRLRALYDQY GTTDEVLIQE QQAQAQRQQA GPFSSSSNFD TEAMSFPDLS PGDLFAQFFN 120
121 SSATPSSNG
|
| Detection Method: |  |
| Confidence: | 159.855515 |
| Match: | 1bq0__ |
| Description: | DnaJ chaperone, N-terminal (J) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| unfolded protein binding | 3.04403163860617 | bayes_pls_golite062009 |
| binding | 2.63138872417193 | bayes_pls_golite062009 |
| heat shock protein binding | 2.17994194200939 | bayes_pls_golite062009 |
| transcription regulator activity | 1.91297632253219 | bayes_pls_golite062009 |
| nucleic acid binding | 1.6342534817623 | bayes_pls_golite062009 |
| chaperone binding | 1.61155546076854 | bayes_pls_golite062009 |
| protein binding | 1.60937254813642 | bayes_pls_golite062009 |
| DNA binding | 1.55234338199368 | bayes_pls_golite062009 |
| Hsp70 protein binding | 0.541755903922701 | bayes_pls_golite062009 |
| catalytic activity | 0.106988907594358 | bayes_pls_golite062009 |
|
Region A: Residues: [130-259] |
1 11 21 31 41 51
| | | | | |
1 SKSSFNFSFN NSSTPSFSFV NGSGVNNLYS SSAKYNSNDE DHHLDRGPDI KHNLKCTLKE 60
61 LYMGKTAKLG LNRTRICSVC DGHGGLKKCT CKTCKGQGIQ TQTRRMGPLV QSWSQTCADC 120
121 GGAGVFVKNK
|
| Detection Method: | |
| Confidence: | 56.0103 |
| Match: | 1exkA_ |
| Description: | Cysteine-rich domain of the chaperone protein DnaJ. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.7298921704023 | bayes_pls_golite062009 |
| protein disulfide isomerase activity | 2.4409950647303 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, transposing S-S bonds | 2.4409950647303 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, interconverting keto- and enol-groups | 2.23398279564144 | bayes_pls_golite062009 |
| unfolded protein binding | 2.04158808514315 | bayes_pls_golite062009 |
| protein binding | 1.57926302986794 | bayes_pls_golite062009 |
| catalytic activity | 0.276917867171685 | bayes_pls_golite062009 |
|
Region A: Residues: [260-457] |
1 11 21 31 41 51
| | | | | |
1 DICQQCQGLG FIKERKILQV TVQPGSCHNQ LIVLTGEGDE VISTKGGGHE KVIPGDVVIT 60
61 ILRLKDPNFQ VINYSNLICK KCKIDFMTSL CGGVVYIEGH PSGKLIKLDI IPGEILKPGC 120
121 FKTVEDMGMP KFINGVRSGF GHLYVKFDVT YPERLEPENA KKIQNILAND KYIKAERSTM 180
181 ETADSDCYCD LEKSYDSV
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1c3gA_ |
| Description: | Heat shock protein 40 Sis1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [458-528] |
1 11 21 31 41 51
| | | | | |
1 EEHVLSSFEA PNLNNEVIED DDLGDLINER DSRKRNNRRF DESNINNNNE TKRNKYSSPV 60
61 SGFYDHDING Y
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
