| Protein: | NIP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 812 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..812] | [1..812] |
|
|
0.0 | [1..812] | [1..812] |
|
|
0.0 | [46..812] | [3..804] |
|
|
0.0 | [46..812] | [3..824] |
|
|
0.0 | [13..812] | [75..895] |
|
Region A: Residues: [1-646] |
1 11 21 31 41 51
| | | | | |
1 MSRFFSSNYE YDVASSSSEE DLLSSSEEDL LSSSSSESEL DQESDDSFFN ESESESEADV 60
61 DSDDSDAKPY GPDWFKKSEF RKQGGGSNKF LKSSNYDSSD EESDEEDGKK VVKSAKEKLL 120
121 DEMQDVYNKI SQAENSDDWL TISNEFDLIS RLLVRAQQQN WGTPNIFIKV VAQVEDAVNN 180
181 TQQADLKNKA VARAYNTTKQ RVKKVSRENE DSMAKFRNDP ESFDKEPTAD LDISANGFTI 240
241 SSSQGNDQAV QEDFFTRLQT IIDSRGKKTV NQQSLISTLE ELLTVAEKPY EFIMAYLTLI 300
301 PSRFDASANL SYQPIDQWKS SFNDISKLLS ILDQTIDTYQ VNEFADPIDF IEDEPKEDSD 360
361 GVKRILGSIF SFVERLDDEF MKSLLNIDPH SSDYLIRLRD EQSIYNLILR TQLYFEATLK 420
421 DEHDLERALT RPFVKRLDHI YYKSENLIKI METAAWNIIP AQFKSKFTSK DQLDSADYVD 480
481 NLIDGLSTIL SKQNNIAVQK RAILYNIYYT ALNKDFQTAK DMLLTSQVQT NINQFDSSLQ 540
541 ILFNRVVVQL GLSAFKLCLI EECHQILNDL LSSSHLREIL GQQSLHRISL NSSNNASADE 600
601 RARQCLPYHQ HINLDLIDVV FLTCSLLIEI PRMTAFYSGI KVKRIP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [647-706] |
1 11 21 31 41 51
| | | | | |
1 YSPKSIRRSL EHYDKLSFQG PPETLRDYVL FAAKSMQKGN WRDSVKYLRE IKSWALLPNM 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [707-812] |
1 11 21 31 41 51
| | | | | |
1 ETVLNSLTER VQVESLKTYF FSFKRFYSSF SVAKLAELFD LPENKVVEVL QSVIAELEIP 60
61 AKLNDEKTIF VVEKGDEITK LEEAMVKLNK EYKIAKERLN PPSNRR
|
| Detection Method: | |
| Confidence: | 15.420216 |
| Match: | PF01399 |
| Description: | PCI domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [358-442] |
1 11 21 31 41 51
| | | | | |
1 DSDGVKRILG SIFSFVERLD DEFMKSLLNI DPHSSDYLIR LRDEQSIYNL ILRTQLYFEA 60
61 TLKDEHDLER ALTRPFVKRL DHIYY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [443-535] |
1 11 21 31 41 51
| | | | | |
1 KSENLIKIME TAAWNIIPAQ FKSKFTSKDQ LDSADYVDNL IDGLSTILSK QNNIAVQKRA 60
61 ILYNIYYTAL NKDFQTAKDM LLTSQVQTNI NQF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [536-662] |
1 11 21 31 41 51
| | | | | |
1 DSSLQILFNR VVVQLGLSAF KLCLIEECHQ ILNDLLSSSH LREILGQQSL HRISLNSSNN 60
61 ASADERARQC LPYHQHINLD LIDVVFLTCS LLIEIPRMTA FYSGIKVKRI PYSPKSIRRS 120
121 LEHYDKL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [663-812] |
1 11 21 31 41 51
| | | | | |
1 SFQGPPETLR DYVLFAAKSM QKGNWRDSVK YLREIKSWAL LPNMETVLNS LTERVQVESL 60
61 KTYFFSFKRF YSSFSVAKLA ELFDLPENKV VEVLQSVIAE LEIPAKLNDE KTIFVVEKGD 120
121 EITKLEEAMV KLNKEYKIAK ERLNPPSNRR
|
| Detection Method: | |
| Confidence: | 1.9 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 2.974370828939 | bayes_pls_golite062009 |
| transcription regulator activity | 2.85334044543318 | bayes_pls_golite062009 |
| nucleic acid binding | 2.8293727459515 | bayes_pls_golite062009 |
| structural molecule activity | 2.72616711594099 | bayes_pls_golite062009 |
| DNA binding | 2.66906990480864 | bayes_pls_golite062009 |
| binding | 2.14387047687719 | bayes_pls_golite062009 |
| transcription factor activity | 1.97506348695089 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.665091289283954 | bayes_pls_golite062009 |
| transcription activator activity | 0.542530812773621 | bayes_pls_golite062009 |
| protein binding | 0.474083852700444 | bayes_pls_golite062009 |
| transcription repressor activity | 0.423955395883599 | bayes_pls_golite062009 |
| RNA binding | 0.352569950847387 | bayes_pls_golite062009 |
