Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSH155.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [72..971] | [387..1304] |
|
|
0.0 | [1..971] | [1..971] |
|
|
0.0 | [72..971] | [390..1307] |
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0.0 | [70..971] | [392..1322] |
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0.0 | [72..971] | [350..1267] |
|
|
0.0 | [22..960] | [270..1192] |
|
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0.0 | [22..960] | [253..1175] |
|
|
0.0 | [119..971] | [531..1386] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MSHPIQFVNA NNSDKSHQLG GQYSIPQDLR ENLQKEAARI GENEKDVLQE KMETRTVQNR 60
61 EDSYHKRRFD M
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.409 | a.77.1 | DEATH domain |
| View | Download | 0.359 | a.74.1 | Cyclin-like |
| View | Download | 0.371 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.521 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.464 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.339 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.338 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.336 | a.39.1 | EF-hand |
| View | Download | 0.326 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.288 | a.5.2 | UBA-like |
| View | Download | 0.286 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.284 | b.7.2 | Periplasmic chaperone C-domain |
| View | Download | 0.267 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.258 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.249 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.243 | a.74.1 | Cyclin-like |
| View | Download | 0.241 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.240 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.237 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.231 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.221 | a.3.1 | Cytochrome c |
| View | Download | 0.220 | a.64.1 | Saposin |
| View | Download | 0.219 | a.21.1 | HMG-box |
| View | Download | 0.209 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.205 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.203 | a.43.1 | Met repressor-like |
| View | Download | 0.201 | a.43.1 | Met repressor-like |
|
Region A: Residues: [72-173] |
1 11 21 31 41 51
| | | | | |
1 KFEPDSDTQT VTSSENTQDA VVPRKRKSRW DVKGYEPPDE SSTAVKENSD SALVNVEGIH 60
61 DLMFFKPSDH KYFADVISKK PIDELNKDEK KERTLSMLLL KI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.248 | 0.062 | U2 snRNP | a.11.2 | Second domain of FERM |
| View | Download | 0.263 | 0.047 | U2 snRNP | d.110.4 | SNARE-like |
| View | Download | 0.220 | 0.032 | U2 snRNP | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
|
Region A: Residues: [174-253] |
1 11 21 31 41 51
| | | | | |
1 KNGNTASRRT SMRILTDKAV TFGPEMIFNR LLPILLDRSL EDQERHLMIK TIDRVLYQLG 60
61 DLTKPYVHKI LVVAAPLLID
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.917 | 0.054 | U2 snRNP | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.913 | 0.054 | U2 snRNP | a.118.9 | ENTH/VHS domain |
| View | Download | 0.964 | 0.054 | U2 snRNP | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.848 | 0.054 | U2 snRNP | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.844 | 0.054 | U2 snRNP | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.772 | 0.054 | U2 snRNP | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.737 | 0.054 | U2 snRNP | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.735 | 0.054 | U2 snRNP | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.700 | 0.054 | U2 snRNP | a.118.1 | ARM repeat |
| View | Download | 0.700 | 0.054 | U2 snRNP | a.2.4 | Theta subunit of DNA polymerase III |
| View | Download | 0.686 | 0.054 | U2 snRNP | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.686 | 0.054 | U2 snRNP | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.660 | 0.054 | U2 snRNP | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.649 | 0.054 | U2 snRNP | a.64.1 | Saposin |
| View | Download | 0.644 | 0.054 | U2 snRNP | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.639 | 0.054 | U2 snRNP | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.633 | 0.054 | U2 snRNP | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.600 | 0.054 | U2 snRNP | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.565 | 0.054 | U2 snRNP | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.556 | 0.054 | U2 snRNP | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.549 | 0.054 | U2 snRNP | a.77.1 | DEATH domain |
| View | Download | 0.538 | 0.054 | U2 snRNP | a.126.1 | Serum albumin-like |
| View | Download | 0.531 | 0.054 | U2 snRNP | a.118.8 | TPR-like |
| View | Download | 0.509 | 0.054 | U2 snRNP | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.509 | 0.054 | U2 snRNP | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.506 | 0.054 | U2 snRNP | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.498 | 0.054 | U2 snRNP | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.498 | 0.054 | U2 snRNP | a.101.1 | Uteroglobin-like |
| View | Download | 0.493 | 0.054 | U2 snRNP | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.493 | 0.054 | U2 snRNP | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.484 | 0.054 | U2 snRNP | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.473 | 0.054 | U2 snRNP | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.467 | 0.054 | U2 snRNP | a.60.2 | RuvA domain 2-like |
| View | Download | 0.462 | 0.054 | U2 snRNP | a.144.1 | PABC (PABP) domain |
| View | Download | 0.454 | 0.054 | U2 snRNP | a.65.1 | Annexin |
| View | Download | 0.444 | 0.054 | U2 snRNP | a.4.1 | Homeodomain-like |
| View | Download | 0.424 | 0.054 | U2 snRNP | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.423 | 0.054 | U2 snRNP | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.414 | 0.054 | U2 snRNP | a.24.3 | Cytochromes |
| View | Download | 0.406 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.405 | 0.054 | U2 snRNP | a.2.7 | tRNA-binding arm |
| View | Download | 0.399 | 0.054 | U2 snRNP | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.388 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.383 | 0.054 | U2 snRNP | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.374 | 0.054 | U2 snRNP | a.3.1 | Cytochrome c |
| View | Download | 0.369 | 0.054 | U2 snRNP | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.360 | 0.054 | U2 snRNP | a.29.2 | Bromodomain |
| View | Download | 0.352 | 0.054 | U2 snRNP | a.24.4 | Hemerythrin |
| View | Download | 0.348 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.334 | 0.054 | U2 snRNP | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.333 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.328 | 0.054 | U2 snRNP | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.327 | 0.054 | U2 snRNP | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.326 | 0.054 | U2 snRNP | a.158.1 | F-box domain |
| View | Download | 0.325 | 0.054 | U2 snRNP | a.29.2 | Bromodomain |
| View | Download | 0.325 | 0.054 | U2 snRNP | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.320 | 0.054 | U2 snRNP | a.118.8 | TPR-like |
| View | Download | 0.319 | 0.054 | U2 snRNP | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.315 | 0.054 | U2 snRNP | a.118.8 | TPR-like |
| View | Download | 0.315 | 0.054 | U2 snRNP | a.39.1 | EF-hand |
| View | Download | 0.311 | 0.054 | U2 snRNP | a.2.3 | Chaperone J-domain |
| View | Download | 0.311 | 0.054 | U2 snRNP | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.311 | 0.054 | U2 snRNP | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.310 | 0.054 | U2 snRNP | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.306 | 0.054 | U2 snRNP | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.305 | 0.054 | U2 snRNP | a.39.3 | Cloroperoxidase |
| View | Download | 0.301 | 0.054 | U2 snRNP | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.299 | 0.054 | U2 snRNP | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.298 | 0.054 | U2 snRNP | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.298 | 0.054 | U2 snRNP | a.64.1 | Saposin |
| View | Download | 0.296 | 0.054 | U2 snRNP | a.29.2 | Bromodomain |
| View | Download | 0.296 | 0.054 | U2 snRNP | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.294 | 0.054 | U2 snRNP | a.46.1 | Methionine synthase domain |
| View | Download | 0.291 | 0.054 | U2 snRNP | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.280 | 0.054 | U2 snRNP | a.118.1 | ARM repeat |
| View | Download | 0.279 | 0.054 | U2 snRNP | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.279 | 0.054 | U2 snRNP | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.278 | 0.054 | U2 snRNP | a.112.1 | Description not found. |
| View | Download | 0.273 | 0.054 | U2 snRNP | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.272 | 0.054 | U2 snRNP | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.271 | 0.054 | U2 snRNP | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.271 | 0.054 | U2 snRNP | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.269 | 0.054 | U2 snRNP | a.24.3 | Cytochromes |
| View | Download | 0.268 | 0.054 | U2 snRNP | a.47.2 | t-snare proteins |
| View | Download | 0.263 | 0.054 | U2 snRNP | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.260 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.260 | 0.054 | U2 snRNP | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.259 | 0.054 | U2 snRNP | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.254 | 0.054 | U2 snRNP | a.118.9 | ENTH/VHS domain |
| View | Download | 0.251 | 0.054 | U2 snRNP | a.39.1 | EF-hand |
| View | Download | 0.247 | 0.054 | U2 snRNP | a.4.1 | Homeodomain-like |
| View | Download | 0.246 | 0.054 | U2 snRNP | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.245 | 0.054 | U2 snRNP | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.245 | 0.054 | U2 snRNP | a.39.1 | EF-hand |
| View | Download | 0.245 | 0.054 | U2 snRNP | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.243 | 0.054 | U2 snRNP | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
| View | Download | 0.243 | 0.054 | U2 snRNP | a.3.1 | Cytochrome c |
| View | Download | 0.242 | 0.054 | U2 snRNP | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.242 | 0.054 | U2 snRNP | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.239 | 0.054 | U2 snRNP | a.4.1 | Homeodomain-like |
| View | Download | 0.238 | 0.054 | U2 snRNP | a.4.1 | Homeodomain-like |
| View | Download | 0.231 | 0.054 | U2 snRNP | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.229 | 0.054 | U2 snRNP | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.228 | 0.054 | U2 snRNP | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.227 | 0.054 | U2 snRNP | a.130.1 | Chorismate mutase II |
| View | Download | 0.227 | 0.054 | U2 snRNP | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.226 | 0.054 | U2 snRNP | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.226 | 0.054 | U2 snRNP | b.82.4 | Regulatory protein AraC |
| View | Download | 0.221 | 0.054 | U2 snRNP | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.220 | 0.054 | U2 snRNP | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.218 | 0.054 | U2 snRNP | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.218 | 0.054 | U2 snRNP | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.218 | 0.054 | U2 snRNP | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.216 | 0.054 | U2 snRNP | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.215 | 0.054 | U2 snRNP | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.214 | 0.054 | U2 snRNP | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.212 | 0.054 | U2 snRNP | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
| View | Download | 0.210 | 0.054 | U2 snRNP | a.39.1 | EF-hand |
| View | Download | 0.209 | 0.054 | U2 snRNP | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.209 | 0.054 | U2 snRNP | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.208 | 0.054 | U2 snRNP | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.207 | 0.054 | U2 snRNP | d.68.7 | R3H domain |
| View | Download | 0.206 | 0.054 | U2 snRNP | d.192.1 | YlxR-like |
| View | Download | 0.203 | 0.054 | U2 snRNP | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.201 | 0.054 | U2 snRNP | a.118.1 | ARM repeat |
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Region A: Residues: [254-363] |
1 11 21 31 41 51
| | | | | |
1 EDPMVRSTGQ EIITNLSTVA GLKTILTVMR PDIENEDEYV RNVTSRAAAV VAKALGVNQL 60
61 LPFINAACHS RKSWKARHTG IKIVQQIGIL LGIGVLNHLT GLMSCIKDCL
|
| Detection Method: | |
| Confidence: | 82.39794 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| binding | 2.91891696274037 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| protein binding | 1.75981610748679 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| RNA cap binding | 0.66277586901495 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| signal sequence binding | 0.289133192719901 | bayes_pls_golite062009 |
|
Region A: Residues: [364-747] |
1 11 21 31 41 51
| | | | | |
1 MDDHVPVRIV TAHTLSTLAE NSYPYGIEVF NVVLEPLWKG IRSHRGKVLS SFLKAVGSMI 60
61 PLMDPEYAGY YTTEAMRIIR REFDSPDDEM KKTILLVLQK CSAVESITPK FLREEIAPEF 120
121 FQKFWVRRVA LDRPLNKVVT YTTVTLAKKL GCSYTIDKLL TPLRDEAEPF RTMAVHAVTR 180
181 TVNLLGTADL DERLETRLID ALLIAFQEQT NSDSIIFKGF GAVTVSLDIR MKPFLAPIVS 240
241 TILNHLKHKT PLVRQHAADL CAILIPVIKN CHEFEMLNKL NIILYESLGE VYPEVLGSII 300
301 NAMYCITSVM DLDKLQPPIN QILPTLTPIL RNKHRKVEVN TIKFVGLIGK LAPTYAPPKE 360
361 WMRICFELLE LLKSTNKEIR RSAN
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1qgkA_ |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [748-971] |
1 11 21 31 41 51
| | | | | |
1 ATFGFIAEAI GPHDVLVALL NNLKVQERQL RVCTAVAIGI VAKVCGPYNV LPVIMNEYTT 60
61 PETNVQNGVL KAMSFMFEYI GNMSKDYIYF ITPLLEDALT DRDLVHRQTA SNVITHLALN 120
121 CSGTGHEDAF IHLMNLLIPN IFETSPHAIM RILEGLEALS QALGPGLFMN YIWAGLFHPA 180
181 KNVRKAFWRV YNNMYVMYQD AMVPFYPVTP DNNEEYIEEL DLVL
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1qgkA_ |
| Description: | Importin beta |
| Matching Structure (courtesy of the PDB): |
|
