| Protein: | CAT8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1433 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAT8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1433] | [1..1429] |
|
|
0.0 | [2..1431] | [103..1443] |
|
|
0.0 | [22..1034] | [7..989] |
|
|
3.0E-65 | [8..709] | [64..766] |
|
Region A: Residues: [1-192] |
1 11 21 31 41 51
| | | | | |
1 MANNNSDRQG LEPRVIRTLG SQALSGPSIS NRTSSSEANP HFSKNVKEAM IKTASPTPLS 60
61 TPIYRIAQAC DRCRSKKTRC DGKRPQCSQC AAVGFECRIS DKLLRKAYPK GYTESLEERV 120
121 RELEAENKRL LALCDIKEQQ ISLVSQSRPQ TSTDNTINGN FKHDLKDAPL NLSSTNIYLL 180
181 NQTVNKQLQN GK
|
| Detection Method: |  |
| Confidence: | 81.144602 |
| Match: | 1d66A_ |
| Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [193-332] |
1 11 21 31 41 51
| | | | | |
1 MDGDNSGSAM SPLGAPPPPP HKDHLCDGVS CTNHLHVKPT STSLNDPTAI SFEQDEAPGL 60
61 PAVKALKSMT THQRSTQLAT LVSLSIPRST EEILFIPQLL TRIRQIFGFN SKQCLYTVSL 120
121 LSSLKNRLPA PRLLAPSTST
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [333-853] |
1 11 21 31 41 51
| | | | | |
1 KLKEKDEDKK LDDDSAFVKR FQSTNLSEFV DLKKFLISLK FNINSFSKQS EKPANDQDDE 60
61 LLSLTEIKEL LHLFFKFWSN QVPILNNDHF LIYFNNFVEV VKHLSTENLE TNNTTKSTVT 120
121 TNHEIFALKL LMMLQMGLLV KIKMEKIKYT VPKNPKAKYA RLMAYYHQLS LIIPKNPYFL 180
181 NMSTTSLPSL QLLSLASFYY LNVGDISAIY GVRGRIVSMA QQLRLHRCPS AVLSVHSNPV 240
241 LQKFEQSERR LLFWAIYYVD VFASLQLGVP RLLKDFDIEC ALPISDVEYK DQLSMENEKA 300
301 DKKAKKIQLQ GQVSSFSLQI IRFAKILGNI LDSIFKRGMM DERITSEVAL VHENALDNWR 360
361 NQLPEMYYFQ ITVNGTVNLD EIRATNQRNT ETKFDKKDII LFEKKILLLF YFLAKSMIHL 420
421 PVIATKPLPK NVDNATKKKQ SMFNNDSKGA TNQDHMILDV DMTSPAIRTS SSYIILQQAT 480
481 NATLTIFQAI NSMYLPLPLN VSRTLIRFSL LCARGSLEYT K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.77469997789536 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.70904317608141 | bayes_pls_golite062009 |
| transcription activator activity | 2.1512787242583 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.08956709478484 | bayes_pls_golite062009 |
|
Region A: Residues: [854-1433] |
1 11 21 31 41 51
| | | | | |
1 GGALFLDNKN LLLDTIKDIE NDRLLDLPGI ASWHTLKLFD MSINLLLKAP NVKVERLDKF 60
61 LEKKLNYYNR LMGLPPATTT SLKPLFGSQS KNSLENRQRT PNVKRENPEH EYLYGNDSNN 120
121 NNNSEAGHSP MTNTTNGNKR LKYEKDAKRN AKDGGISKGE NAHNFQNDTK KNMSTSNLFP 180
181 FSFSNTDLTA LFTHPEGPNC TNTNNGNVDV CNRASTDATD ANIENLSFLN MAPFLQTGNS 240
241 NIGQNTIENK PMHMDAIFSL PSNLDLMKDN MDSKPEQLEP VIKQNPENSK NNQFHQKGKS 300
301 TNMEKNNLSF NNKSNYSLTK LMRLLNNDNS FSNISINNFL YQNDQNSASA DPGTNKKAVT 360
361 NAGANFKPPS TGSNTSQGSI LGSTKHGMDN CDFNDLGNFN NFMTNVNYSG VDYDYIVDAS 420
421 LGLAPLLVDT PDISNTNTTS TTSNRSKNSI ILDTTFNDDL DRSRMNAREV LNPTDSILSQ 480
481 GMVSSVSTRN TSNQRSLSSG NDSKGDSSSQ ENSKSATGNQ LDTPSTLFQM RRTSSGPSAS 540
541 HRGPRRPQKN RYNTDRSKSS GGGSSNTDNV SDLFQWQNAK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [513-764] |
1 11 21 31 41 51
| | | | | |
1 NMSTTSLPSL QLLSLASFYY LNVGDISAIY GVRGRIVSMA QQLRLHRCPS AVLSVHSNPV 60
61 LQKFEQSERR LLFWAIYYVD VFASLQLGVP RLLKDFDIEC ALPISDVEYK DQLSMENEKA 120
121 DKKAKKIQLQ GQVSSFSLQI IRFAKILGNI LDSIFKRGMM DERITSEVAL VHENALDNWR 180
181 NQLPEMYYFQ ITVNGTVNLD EIRATNQRNT ETKFDKKDII LFEKKILLLF YFLAKSMIHL 240
241 PVIATKPLPK NV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [765-824] |
1 11 21 31 41 51
| | | | | |
1 DNATKKKQSM FNNDSKGATN QDHMILDVDM TSPAIRTSSS YIILQQATNA TLTIFQAINS 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [825-1044] |
1 11 21 31 41 51
| | | | | |
1 MYLPLPLNVS RTLIRFSLLC ARGSLEYTKG GALFLDNKNL LLDTIKDIEN DRLLDLPGIA 60
61 SWHTLKLFDM SINLLLKAPN VKVERLDKFL EKKLNYYNRL MGLPPATTTS LKPLFGSQSK 120
121 NSLENRQRTP NVKRENPEHE YLYGNDSNNN NNSEAGHSPM TNTTNGNKRL KYEKDAKRNA 180
181 KDGGISKGEN AHNFQNDTKK NMSTSNLFPF SFSNTDLTAL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1045-1206] |
1 11 21 31 41 51
| | | | | |
1 FTHPEGPNCT NTNNGNVDVC NRASTDATDA NIENLSFLNM APFLQTGNSN IGQNTIENKP 60
61 MHMDAIFSLP SNLDLMKDNM DSKPEQLEPV IKQNPENSKN NQFHQKGKST NMEKNNLSFN 120
121 NKSNYSLTKL MRLLNNDNSF SNISINNFLY QNDQNSASAD PG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1207-1433] |
1 11 21 31 41 51
| | | | | |
1 TNKKAVTNAG ANFKPPSTGS NTSQGSILGS TKHGMDNCDF NDLGNFNNFM TNVNYSGVDY 60
61 DYIVDASLGL APLLVDTPDI SNTNTTSTTS NRSKNSIILD TTFNDDLDRS RMNAREVLNP 120
121 TDSILSQGMV SSVSTRNTSN QRSLSSGNDS KGDSSSQENS KSATGNQLDT PSTLFQMRRT 180
181 SSGPSASHRG PRRPQKNRYN TDRSKSSGGG SSNTDNVSDL FQWQNAK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
