| Protein: | DSK2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 373 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSK2.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-61 | [1..373] | [1..373] |
|
|
3.0E-60 | [3..372] | [1..364] |
|
|
2.0E-58 | [3..370] | [1..382] |
|
|
9.0E-53 | [3..370] | [1..376] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MSLNIHIKSG QDKWEVNVAP ESTVLQFKEA INKANGIPVA NQRLIYSGKI LKDDQTVESY 60
61 HIQDGHSVHL VKSQPKPQTA SAAGANNATA TGAAAGTGAT PNMSSGQ
|
| Detection Method: |  |
| Confidence: | 110.703922 |
| Match: | 1bt0A_ |
| Description: | Rub1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.35791544110308 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.83465130904364 | bayes_pls_golite062009 |
| protein binding | 1.76858817153382 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32707653701567 | bayes_pls_golite062009 |
| DNA binding | 1.22622447288034 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.16468510691469 | bayes_pls_golite062009 |
| tubulin binding | 1.11505425062041 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.919595189902044 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.907853439770547 | bayes_pls_golite062009 |
| microtubule binding | 0.84012258724586 | bayes_pls_golite062009 |
| hydrolase activity | 0.247201449341942 | bayes_pls_golite062009 |
|
Region A: Residues: [108-259] |
1 11 21 31 41 51
| | | | | |
1 SAGFNPLADL TSARYAGYLN MPSADMFGPD GGALNNDSNN QDELLRMMEN PIFQSQMNEM 60
61 LSNPQMLDFM IQSNPQLQAM GPQARQMLQS PMFRQMLTNP DMIRQSMQFA RMMDPNAGMG 120
121 SAGGAASAFP APGGDAPEEG SNTNTTSSSN TG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.9974054448593 | bayes_pls_golite062009 |
| DNA binding | 2.7109101781315 | bayes_pls_golite062009 |
| nucleic acid binding | 2.65801759476965 | bayes_pls_golite062009 |
| damaged DNA binding | 2.33590042963509 | bayes_pls_golite062009 |
| transcription regulator activity | 1.57741426576729 | bayes_pls_golite062009 |
| ubiquitin binding | 1.38611607035372 | bayes_pls_golite062009 |
| small conjugating protein binding | 1.25128759629714 | bayes_pls_golite062009 |
| protein binding | 0.989474580552798 | bayes_pls_golite062009 |
| hydrolase activity | 0.365329242181237 | bayes_pls_golite062009 |
| catalytic activity | 0.2736776367506 | bayes_pls_golite062009 |
| peptidase activity | 0.0113950255895392 | bayes_pls_golite062009 |
|
Region A: Residues: [260-329] |
1 11 21 31 41 51
| | | | | |
1 NNAGTNAGTN AGANTAANPF ASLLNPALNP FANAGNAAST GMPAFDPALL ASMFQPPVQA 60
61 SQAEDTRPPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.519 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.652 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.571 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.485 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.569 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.443 | a.4.1 | Homeodomain-like |
| View | Download | 0.427 | a.4.1 | Homeodomain-like |
| View | Download | 0.404 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.383 | a.4.1 | Homeodomain-like |
| View | Download | 0.382 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.368 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.357 | a.4.1 | Homeodomain-like |
| View | Download | 0.357 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.357 | a.4.1 | Homeodomain-like |
| View | Download | 0.346 | d.68.3 | SirA-like |
| View | Download | 0.317 | a.64.1 | Saposin |
| View | Download | 0.313 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.312 | a.17.1 | p8-MTCP1 |
| View | Download | 0.301 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.300 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.297 | a.4.1 | Homeodomain-like |
| View | Download | 0.294 | d.42.1 | POZ domain |
| View | Download | 0.289 | a.74.1 | Cyclin-like |
| View | Download | 0.279 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.278 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.273 | a.64.1 | Saposin |
| View | Download | 0.272 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.272 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.259 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.254 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.249 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.240 | d.120.1 | Cytochrome b5 |
| View | Download | 0.232 | d.68.7 | R3H domain |
| View | Download | 0.231 | d.42.1 | POZ domain |
| View | Download | 0.216 | a.21.1 | HMG-box |
| View | Download | 0.202 | g.15.1 | Ovomucoid/PCI-1 like inhibitors |
|
Region A: Residues: [330-373] |
1 11 21 31 41 51
| | | | | |
1 ERYEHQLRQL NDMGFFDFDR NVAALRRSGG SVQGALDSLL NGDV
|
| Detection Method: | |
| Confidence: | 11.30103 |
| Match: | 1f4iA_ |
| Description: | DNA repair protein Hhr23a |
Matching Structure (courtesy of the PDB): |
|
