Protein: | ECM5 |
Organism: | Saccharomyces cerevisiae |
Length: | 1411 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM5.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1411] | [1..1411] |
|
0.0 | [94..1367] | [144..1427] |
|
0.0 | [105..1393] | [148..1448] |
|
0.0 | [95..1371] | [207..1560] |
|
0.0 | [246..1367] | [42..1096] |
|
0.0 | [96..1191] | [11..1065] |
|
0.0 | [282..1386] | [383..1473] |
|
0.0 | [130..1385] | [68..1235] |
Region A: Residues: [1-114] |
1 11 21 31 41 51 | | | | | | 1 MSGHDSVTKI SHILNEPVNE KVMVQNGFHE SSKIADIELE IQERPSIKQW ESPRSAVIPT 60 61 SNHNFSPFLY TQFKSRGAAP FAPETIKSVD LVELPEGVPA RVFHEKTGLF YQIS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [115-211] |
1 11 21 31 41 51 | | | | | | 1 PHSIPTFILA KKELPDPIKF YELVEDLGSV YGCVKLKIIP DADKFTQLNV DVDRLWFKAR 60 61 KQFFNSNEFQ RTKIVDFYAK LYNFHNKIKK STLTRIP |
Detection Method: | |
Confidence: | 91.0103 |
Match: | 1kqqA_ |
Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [212-317] |
1 11 21 31 41 51 | | | | | | 1 SIDKRTLDLY RLRSCVKLRG GFNAVCEKKL WAQIGRELGY SGRIMSSLST SLRSAYAKIL 60 61 LDFDIYEEEE QAARNNEKNE DMVESEIFRH SNSRSRDEEE PLHKKA |
Detection Method: | |
Confidence: | 91.0103 |
Match: | 1kqqA_ |
Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.82429745664596 | bayes_pls_golite062009 |
nucleic acid binding | 1.96196521368194 | bayes_pls_golite062009 |
DNA binding | 1.95175882800914 | bayes_pls_golite062009 |
transcription regulator activity | 1.69129851237145 | bayes_pls_golite062009 |
transcription coactivator activity | 0.9777334079728 | bayes_pls_golite062009 |
protein binding | 0.923807406971133 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.89101605547219 | bayes_pls_golite062009 |
transcription activator activity | 0.302416902310042 | bayes_pls_golite062009 |
transcription factor activity | 0.143417837230029 | bayes_pls_golite062009 |
transcription factor binding | 0.0217863068537998 | bayes_pls_golite062009 |
Region A: Residues: [318-394] |
1 11 21 31 41 51 | | | | | | 1 KIHRDVFRAG SINHEFKRMR DIKHIKGFPT YFNSLTEFKL GYTQSTETTL PGYDFTFWEN 60 61 GMEIYDKSKY ETKTSPV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.459 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.252 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
View | Download | 0.217 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.273 | a.156.1 | S13-like H2TH domain |
View | Download | 0.212 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
View | Download | 0.210 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
View | Download | 0.210 | a.2.2 | Ribosomal protein L29 (L29p) |
Region A: Residues: [395-739] |
1 11 21 31 41 51 | | | | | | 1 YNLRQYYEKS LAVFTAIVAK FGSSYPDLFA KHTTLPQKEF ERLYFHLLSE HFIDFEIDTG 60 61 LGLPCSMRSP GNNSSNEKFA IKNILDQWNL DNIPLNELSL LQHLDLDMAN FTRTTYDIGM 120 121 LFSCQGWSVS DHFLPSIDFN HLGSTKLVYS IAPKDMEKFE ALIARGKSEW DTIQSRPRYS 180 181 TSDDELKSFI ETDFYKSFLD AEQSADYSNT GDNSKNSFPE DKIAGNTLHD GSQSDFIFEP 240 241 NFILANGIKL YKTTQEQGSY IFKFPKAFTC SIGSGFYLSQ NAKFAPSSWL RFSSEAAKWT 300 301 SKMGFLPGLD VNQLLINALL NSNNPVLRKK CRDLISNYVV EEAEN |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [740-824] |
1 11 21 31 41 51 | | | | | | 1 SKKLGELIGT VDVVYNKLNY ISDISLESTG LSKIVVTHGA LQRNLSLKEF VVLLEKPENG 60 61 AHSICGIPIR DQSGNLNVCL HSYFD |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.423 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.415 | a.3.1 | Cytochrome c |
View | Download | 0.581 | b.36.1 | PDZ domain-like |
View | Download | 0.587 | a.144.1 | PABC (PABP) domain |
View | Download | 0.648 | a.64.1 | Saposin |
View | Download | 0.648 | a.64.1 | Saposin |
View | Download | 0.587 | a.144.1 | PABC (PABP) domain |
View | Download | 0.581 | b.36.1 | PDZ domain-like |
View | Download | 0.423 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.415 | a.3.1 | Cytochrome c |
View | Download | 0.413 | a.81.1 | N-terminal domain of DnaB helicase |
View | Download | 0.411 | d.56.1 | GroEL-intermediate domain like |
View | Download | 0.367 | b.1.2 | Fibronectin type III |
View | Download | 0.367 | a.81.1 | N-terminal domain of DnaB helicase |
View | Download | 0.352 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.346 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
View | Download | 0.339 | a.39.1 | EF-hand |
View | Download | 0.336 | a.76.1 | Iron-dependent represor protein, dimerization domain |
View | Download | 0.328 | a.3.1 | Cytochrome c |
View | Download | 0.328 | a.60.8 | HRDC-like |
View | Download | 0.301 | a.112.1 | Description not found. |
View | Download | 0.289 | a.7.7 | BAG domain |
View | Download | 0.282 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
View | Download | 0.278 | a.77.1 | DEATH domain |
View | Download | 0.278 | d.1.1 | Microbial ribonucleases |
View | Download | 0.278 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.277 | a.81.1 | N-terminal domain of DnaB helicase |
View | Download | 0.274 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
View | Download | 0.271 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
View | Download | 0.265 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.256 | d.32.1 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
View | Download | 0.254 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
View | Download | 0.251 | a.29.2 | Bromodomain |
View | Download | 0.240 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.239 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
View | Download | 0.239 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.228 | d.1.1 | Microbial ribonucleases |
View | Download | 0.227 | a.74.1 | Cyclin-like |
View | Download | 0.224 | a.60.2 | RuvA domain 2-like |
View | Download | 0.224 | a.5.2 | UBA-like |
View | Download | 0.224 | c.23.1 | CheY-like |
View | Download | 0.217 | d.73.1 | RuBisCO, small subunit |
View | Download | 0.217 | a.81.1 | N-terminal domain of DnaB helicase |
View | Download | 0.216 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.211 | a.74.1 | Cyclin-like |
View | Download | 0.211 | d.93.1 | SH2 domain |
View | Download | 0.210 | a.74.1 | Cyclin-like |
View | Download | 0.209 | c.51.3 | B12-dependend dehydatases associated subunit |
View | Download | 0.208 | a.74.1 | Cyclin-like |
View | Download | 0.206 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.205 | a.28.3 | Retrovirus capsid protein C-terminal domain |
View | Download | 0.205 | a.6.1 | Putative DNA-binding domain |
View | Download | 0.200 | a.74.1 | Cyclin-like |
Region A: Residues: [825-886] |
1 11 21 31 41 51 | | | | | | 1 SASLGIALDG LDKPPTSYLL VHNEDFEKKW DVLMTSTFRN RTVPLNIIQY LISHTDSNTE 60 61 FN |
Detection Method: | |
Confidence: | 4.09691 |
Match: | 1dg3A_ |
Description: | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [887-1219] |
1 11 21 31 41 51 | | | | | | 1 RMLRSNFDDS LLLIEKCKKF IKTFVDVSCS VKDVDFGNGF NLRHLPLKFS DNMADNLESL 60 61 YESVRKCSIE FSEKPTIIRL YHVSRQFPID NRDIIDGNNL DLLKELYQKS LTIPLKVSYW 120 121 TKLTRKICRL EWLSVYEHIF IERCDIKNED PAKYSLPLLY SYFEFGLKYC DSEDIDKLGE 180 181 VRKLILKYQD MMQKVRVFLK KDPPSKISLS DLEDVLLDIE EYRLPIQSSF FSELDYVIRE 240 241 IENAKKMNDV NILYNTDNID KIDELIRKND PKFVKFANQF NGSRLDKRPL ASDNSGSVKA 300 301 KQELKVFKLW NQHLDQIMQK NKFIEILPSI FRC |
Detection Method: | |
Confidence: | 23.30103 |
Match: | 1i84S_ |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1220-1299] |
1 11 21 31 41 51 | | | | | | 1 LDLKSDKYIP LESCSKRQTK YCFCRRVEEG TAMVECEICK EWYHVDCISN GELVPPDDPN 60 61 VLFVCSICTP PCMAVDNIEG |
Detection Method: | |
Confidence: | 2.30103 |
Match: | 1fp0A_ |
Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1300-1411] |
1 11 21 31 41 51 | | | | | | 1 VTFELDDLKR ILVESLKLSL IPDPPILKNL FDVFAFALNF KNEMEKELFT NGYVNQLSST 60 61 HKIKYYLRKL KGSQCGFTNL TDPLRKHCQV KDAEAIKWLT DNGRIIITGI PN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.373 | 0.952 | cellular cell wall organization | c.30.1 | PreATP-grasp domain |
View | Download | 0.540 | 0.952 | cellular cell wall organization | a.22.1 | Histone-fold |
View | Download | 0.384 | 0.952 | cellular cell wall organization | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.276 | 0.952 | cellular cell wall organization | a.74.1 | Cyclin-like |
View | Download | 0.243 | 0.952 | cellular cell wall organization | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.242 | 0.952 | cellular cell wall organization | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.235 | 0.952 | cellular cell wall organization | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.235 | 0.952 | cellular cell wall organization | a.74.1 | Cyclin-like |
View | Download | 0.227 | 0.952 | cellular cell wall organization | a.118.8 | TPR-like |
View | Download | 0.220 | 0.952 | cellular cell wall organization | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
View | Download | 0.219 | 0.952 | cellular cell wall organization | a.66.1 | Transducin (alpha subunit), insertion domain |
View | Download | 0.219 | 0.952 | cellular cell wall organization | a.74.1 | Cyclin-like |
View | Download | 0.209 | 0.952 | cellular cell wall organization | f.1.5 | Exotoxin A, middle domain |
View | Download | 0.205 | 0.952 | cellular cell wall organization | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |