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Protein Overview: ECM5_YEAST

General Information:
Name(s) found: ECM5_YEAST [Swiss-Prot]
Description(s) found:
  • Protein ECM5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM5 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 1411 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHDSVTKI SHILNEPVNE KVMVQNGFHE SSKIADIELE IQERPSIKQW ESPRSAVIPT  60
   61 SNHNFSPFLY TQFKSRGAAP FAPETIKSVD LVELPEGVPA RVFHEKTGLF YQISPHSIPT 120
  121 FILAKKELPD PIKFYELVED LGSVYGCVKL KIIPDADKFT QLNVDVDRLW FKARKQFFNS 180
  181 NEFQRTKIVD FYAKLYNFHN KIKKSTLTRI PSIDKRTLDL YRLRSCVKLR GGFNAVCEKK 240
  241 LWAQIGRELG YSGRIMSSLS TSLRSAYAKI LLDFDIYEEE EQAARNNEKN EDMVESEIFR 300
  301 HSNSRSRDEE EPLHKKAKIH RDVFRAGSIN HEFKRMRDIK HIKGFPTYFN SLTEFKLGYT 360
  361 QSTETTLPGY DFTFWENGME IYDKSKYETK TSPVYNLRQY YEKSLAVFTA IVAKFGSSYP 420
  421 DLFAKHTTLP QKEFERLYFH LLSEHFIDFE IDTGLGLPCS MRSPGNNSSN EKFAIKNILD 480
  481 QWNLDNIPLN ELSLLQHLDL DMANFTRTTY DIGMLFSCQG WSVSDHFLPS IDFNHLGSTK 540
  541 LVYSIAPKDM EKFEALIARG KSEWDTIQSR PRYSTSDDEL KSFIETDFYK SFLDAEQSAD 600
  601 YSNTGDNSKN SFPEDKIAGN TLHDGSQSDF IFEPNFILAN GIKLYKTTQE QGSYIFKFPK 660
  661 AFTCSIGSGF YLSQNAKFAP SSWLRFSSEA AKWTSKMGFL PGLDVNQLLI NALLNSNNPV 720
  721 LRKKCRDLIS NYVVEEAENS KKLGELIGTV DVVYNKLNYI SDISLESTGL SKIVVTHGAL 780
  781 QRNLSLKEFV VLLEKPENGA HSICGIPIRD QSGNLNVCLH SYFDSASLGI ALDGLDKPPT 840
  841 SYLLVHNEDF EKKWDVLMTS TFRNRTVPLN IIQYLISHTD SNTEFNRMLR SNFDDSLLLI 900
  901 EKCKKFIKTF VDVSCSVKDV DFGNGFNLRH LPLKFSDNMA DNLESLYESV RKCSIEFSEK 960
  961 PTIIRLYHVS RQFPIDNRDI IDGNNLDLLK ELYQKSLTIP LKVSYWTKLT RKICRLEWLS1020
 1021 VYEHIFIERC DIKNEDPAKY SLPLLYSYFE FGLKYCDSED IDKLGEVRKL ILKYQDMMQK1080
 1081 VRVFLKKDPP SKISLSDLED VLLDIEEYRL PIQSSFFSEL DYVIREIENA KKMNDVNILY1140
 1141 NTDNIDKIDE LIRKNDPKFV KFANQFNGSR LDKRPLASDN SGSVKAKQEL KVFKLWNQHL1200
 1201 DQIMQKNKFI EILPSIFRCL DLKSDKYIPL ESCSKRQTKY CFCRRVEEGT AMVECEICKE1260
 1261 WYHVDCISNG ELVPPDDPNV LFVCSICTPP CMAVDNIEGV TFELDDLKRI LVESLKLSLI1320
 1321 PDPPILKNLF DVFAFALNFK NEMEKELFTN GYVNQLSSTH KIKYYLRKLK GSQCGFTNLT1380
 1381 DPLRKHCQVK DAEAIKWLTD NGRIIITGIP N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] deduced N/A No confident structure predictions are available.
    2 View Details [115..211] PSI-BLAST 91.0103 DNA-binding domain from the dead ringer protein
    3 View Details [212..317] PSI-BLAST 91.0103 DNA-binding domain from the dead ringer protein
    4 View Details [318..394] deduced N/A No confident structure predictions are available.
    5 View Details [395..739] MSA 9.11995 View MSA. No confident structure predictions are available.
    6 View Details [740..824] deduced N/A No confident structure predictions are available.
    7 View Details [825..886] PSI-BLAST 4.09691 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    8 View Details [887..1219] PSI-BLAST 23.30103 Heavy meromyosin subfragment
    9 View Details [1220..1299] PSI-BLAST 2.30103 Nuclear corepressor KAP-1 (TIF-1beta)
    10 View Details [1300..1411] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.82429745664596 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.96196521368194 bayes_pls_golite062009
  • DNA binding
    		•  1.95175882800914 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.69129851237145 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.9777334079728 bayes_pls_golite062009
  • protein binding
    		•  0.923807406971133 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.89101605547219 bayes_pls_golite062009
  • transcription activator activity
    		•  0.302416902310042 bayes_pls_golite062009
  • transcription factor activity
    		•  0.143417837230029 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0217863068537998 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle