| Protein: | STO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 861 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STO1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..861] | [1..861] |
|
|
0.0 | [9..861] | [6..858] |
|
|
0.0 | [3..854] | [5..884] |
|
|
0.0 | [6..824] | [3..718] |
|
|
0.0 | [5..824] | [3..728] |
|
|
0.0 | [42..812] | [7..702] |
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 MFNRKRRGDF DEDENYRDFR PRMPKRQRIP PVVQLCKEMM PDIRTIGESV KAFEDDIKFL 60
61 SEAIMNEYGH EDYFNNALLS TLNAVVVEQP QKQAAIALLT MVVNSKNNVA GKSIINYFFE 120
121 ELQKWCKQTY NDEFKSTSNE TGPWNKIKLI LRFLSILSPM FLVDELINIY KSLFELSIEL 180
181 NNLDPGNRVP LSEAIYTNTL LNIPYLFFFN RNNDGLRTKV EELLAYVEQN Y
|
|
Region B: Residues: [259-320] |
1 11 21 31 41 51
| | | | | |
1 VLPNVKKALI NNLEQLNELF PDWNHLLTPQ TGDEGFNDAL TLPSVDDLKS FVRLNKNFGS 60
61 VD
|
| Detection Method: |  |
| Confidence: | 1136.9897 |
| Match: | 1h6kA_ |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA cap binding | 6.31996430626206 | bayes_pls_golite062009 |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| structural molecule activity | 2.87774614675757 | bayes_pls_golite062009 |
| nucleic acid binding | 2.74745843355294 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16673352512615 | bayes_pls_golite062009 |
| DNA binding | 1.95242774903625 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| transcription factor activity | 1.20660383756339 | bayes_pls_golite062009 |
| translation regulator activity | 1.02418717576405 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.00890624159335 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.83079633551839 | bayes_pls_golite062009 |
| hydrolase activity | 0.42501390959416 | bayes_pls_golite062009 |
| transcription activator activity | 0.160275383613705 | bayes_pls_golite062009 |
| transcription factor binding | 0.0221966060394205 | bayes_pls_golite062009 |
|
Region A: Residues: [232-258] |
1 11 21 31 41 51
| | | | | |
1 LVKTTDINLL REYNGEPPYE MVELVRV
|
|
Region B: Residues: [321-462] |
1 11 21 31 41 51
| | | | | |
1 SMWKTPRYAF HVYLPNSAGN FETVVPISTY AGQLFNDIII DLVESLEFNR KEVARQVITL 60
61 DLFFKAGIFT EPGESIAQLI ATYEENPLAP TFKIEDLAIE TILGLIFKLP SVSQPFAYFY 120
121 TLLVDICQNS PKAIAPVFGR AF
|
| Detection Method: | |
| Confidence: | 1136.9897 |
| Match: | 1h6kA_ |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [463-555] |
1 11 21 31 41 51
| | | | | |
1 RFFYSHLDSL DFELKLRYLD WFSIQMSNFN FSWKWNEWED DSIKFGKYFY NPKVNFAKNL 60
61 IQKELRLTSN FSEVEDSLPQ EFTKYLDTSY IPR
|
| Detection Method: | |
| Confidence: | 1136.9897 |
| Match: | 1h6kA_ |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [556-861] |
1 11 21 31 41 51
| | | | | |
1 DQLINYYQSL FTGYTVEEDS VRKNDLYFRQ EGVPMENTVR KILDYTHKAN NSREVTELES 60
61 ILGELKNEYG SIISDFNRFV IILLVQAVTD SGSRSLSHAN KYINDLKEDL KTIFAKIELD 120
121 IETKEYIIIE AVLTFWNANP QTGFLVADAF KYAGLLTSRT IFTFIFNETG LKNNGLIEAT 180
181 AIEAVFRNLS QQISEENESG NNFEFVFERL CTIANSTIDL LDVNADEDIE IPKVNGEMDI 240
241 DDIEDDKLDL KWKYFTVIGF IKSILRRYSH EYRELADKFI ANIDNAIPHE STRRTISNWI 300
301 QETKEV
|
| Detection Method: | |
| Confidence: | 1136.9897 |
| Match: | 1h6kA_ |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
