| Protein: | SFP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 683 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [55..682] | [200..813] |
|
|
0.0 | [44..681] | [248..870] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MDFTTMTMAS NMATSTTTTA TSAHASINSS SNFNIDIDSN QNTPSILINN NSDSSNGKNT 60
61 DFNGVNNIHQ KNIMNNTNNV HLYSPNIMDQ TLLTPQDIAK LRRESIAHSQ GMG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.942 | 0.011 | nucleus | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
|
Region A: Residues: [114-323] |
1 11 21 31 41 51
| | | | | |
1 GVSWGSISVG SWLRDEIISR RNSIVPASAN GAASAAASAT TTATNTLQIQ QPTKRPSVSN 60
61 PPYHRGYSIS PQIAYTAYLP NLEKQYCKDY SCCGLSLPGL HDLLRHYEEA HISTSPNTTN 120
121 MSQIPMNSAG NTSSSVRMTN NTSSANYNLQ NNMAANTKNA GHKTNTMQAH SSNATNNTSI 180
181 NNMHANLQSN MDSNSTIRQS QHPHHQQNII
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| DNA binding | 4.06558617622942 | bayes_pls_golite062009 |
| nucleic acid binding | 3.94726902110129 | bayes_pls_golite062009 |
| transcription factor activity | 3.0829185849524 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.05542379535543 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| transcription repressor activity | 1.44763794968807 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.18927065676691 | bayes_pls_golite062009 |
| chromatin binding | 1.14387291281112 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.668979099236657 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [324-434] |
1 11 21 31 41 51
| | | | | |
1 QQQLQSNSVN HTSGAVPTPS VMGSATASST TANPNVISIT GAPNSGLSMA NHSQQLHLNG 60
61 NLVDAVSTND VFLRTSNSPS RHVPHNKQIN SNNNSGININ NNTSHNSNIN M
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [435-511] |
1 11 21 31 41 51
| | | | | |
1 GSKNAMVNRP HTFNNYSLNK TSRNPIQHQS RKIDPHQTDL SPLVLVQDID LSFMDDDILG 60
61 PSNHNSMNSV VNPTTGS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [512-589] |
1 11 21 31 41 51
| | | | | |
1 HNYNTFHSSV HAKSSQNMVE DQDIDDIDDD DDVDDDDDDD DDDDTENGSS SNGKSVHNNN 60
61 YKMPQQAYID DPARRLYV
|
| Detection Method: | |
| Confidence: | 48.39794 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| DNA binding | 4.31726585409267 | bayes_pls_golite062009 |
| nucleic acid binding | 4.18253042271426 | bayes_pls_golite062009 |
| transcription factor activity | 3.30488091451207 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| chromatin binding | 1.41340072049908 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.35040510840599 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.94201971474109 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [590-683] |
1 11 21 31 41 51
| | | | | |
1 MDHEEQKPFK CPVIGCEKTY KNQNGLKYHR LHGHQNQKLH ENPDGTFSVI DPDSTDSFGD 60
61 GMGSAKDKPY RCEVCGKRYK NLNGLKYHRG HSTH
|
| Detection Method: | |
| Confidence: | 48.39794 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
| Matching Structure (courtesy of the PDB): |
|
