| Protein: | DUS3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 609 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DUS3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..609] | [1..609] |
|
|
0.0 | [38..601] | [28..550] |
|
|
0.0 | [39..601] | [57..574] |
|
|
4.0E-97 | [62..601] | [12..550] |
|
|
1.0E-95 | [1..601] | [5..632] |
|
|
1.0E-93 | [26..601] | [2..542] |
|
|
9.0E-83 | [24..601] | [8..492] |
|
|
7.0E-80 | [282..607] | [1..303] |
|
Region A: Residues: [1-257] |
1 11 21 31 41 51
| | | | | |
1 MEQNAEKRSI VGDDNSTVKR QDTSPSKGIA HIKPEYIVPL KQNENQKVAI YDEEMSSDRM 60
61 TNEFAGGTNK KNKNGRGKKR GQNKNRDNRQ VKEQNVLCPR LIHGDISKCS FGDNCRFVHD 120
121 INLYLSTKKP EVESNIFPSC PVFNSLGFCP MGFKCRFLSS HLNKEDNILI SKKEIDPDAQ 180
181 TIWSVKGEVN HISPERKLDL IKRRFPFTKS NEILEIIDSF QQECRDSMKP EEEVESTPQL 240
241 KKQDPDVEQP VAPQVEQ
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [258-609] |
1 11 21 31 41 51
| | | | | |
1 RNKELSEHRM KQREVYLKYK DTRYFAQEKK PLDLYHKKIV SPLTTVGNLP YRRLMRKLGA 60
61 DVTYSEMALA VPLIQGTNSE WALPKAHTSE FPGFGVQVAC SKAWQAAKAA EALANSVSEI 120
121 SEINLNSGCP IDLLYRQGSG SALLDNPARM IRCLNAMNYV SKDIPITVKI RTGTKEGHPI 180
181 AEGLVKRLVN ETDVAAITLH GRSRQQRYTK SADWDYVSQV ADTLRSAEAD FIETEQGKEG 240
241 RDSKNRIQFV GNGDVNNFED WYRYLNGNEN IDSVMVARGA LIKPWIFEEV ESQQYLDKTS 300
301 TERLDILRDY AQFSMEHWGT DEYGISQCRR FFCEFMSFFH RYVPWVFVKD TL
|
| Detection Method: | |
| Confidence: | 51.39794 |
| Match: | 1ep1A_ |
| Description: | Dihydroorotate dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [180-276] |
1 11 21 31 41 51
| | | | | |
1 QTIWSVKGEV NHISPERKLD LIKRRFPFTK SNEILEIIDS FQQECRDSMK PEEEVESTPQ 60
61 LKKQDPDVEQ PVAPQVEQRN KELSEHRMKQ REVYLKY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [277-609] |
1 11 21 31 41 51
| | | | | |
1 KDTRYFAQEK KPLDLYHKKI VSPLTTVGNL PYRRLMRKLG ADVTYSEMAL AVPLIQGTNS 60
61 EWALPKAHTS EFPGFGVQVA CSKAWQAAKA AEALANSVSE ISEINLNSGC PIDLLYRQGS 120
121 GSALLDNPAR MIRCLNAMNY VSKDIPITVK IRTGTKEGHP IAEGLVKRLV NETDVAAITL 180
181 HGRSRQQRYT KSADWDYVSQ VADTLRSAEA DFIETEQGKE GRDSKNRIQF VGNGDVNNFE 240
241 DWYRYLNGNE NIDSVMVARG ALIKPWIFEE VESQQYLDKT STERLDILRD YAQFSMEHWG 300
301 TDEYGISQCR RFFCEFMSFF HRYVPWVFVK DTL
|
| Detection Method: | |
| Confidence: | 64.221849 |
| Match: | 1vhnA |
| Description: | Crystal structure of a putative flavin oxidoreductase with flavin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.13899087582327 | bayes_pls_golite062009 |
| catalytic activity | 1.94749091175302 | bayes_pls_golite062009 |
| tRNA dihydrouridine synthase activity | 1.94490879164338 | bayes_pls_golite062009 |
| binding | 1.2785695107981 | bayes_pls_golite062009 |
