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Protein Overview: CE19615

General Information:
Name(s) found: CE19615 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00021377 status:Confirmed UniProt:Q9TYN2 protein_id:CCD61343.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 554 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    oxidoreductase activity [IEALink to PubMed article]
    FAD binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPMPDSRD INVAPIKEQY ILPKEDHELP AEVQALPKRE RRGMNKTRRK DMKHAETRIR  60
   61 AAAVRLCPSV IQPVACKFGE KCNCEHDISA FLAKKPADIG VACPLYDARG ACPFSYACRF 120
  121 GGAHLDEAGQ QSEKSPEKPY EPTTNCHSMK IQVALRKREY DFEKTEKALE AIKNENFEVL 180
  181 ELSLSTVGAM CREKKPLNMG SLDGKKYLAP LTTVGNLPFR RICVDYGADI TCGEMALATS 240
  241 ILSGTASEYS LLKRHPCEKI FGVQLAGGFA DTMAKASQIV VENFDVDFID INMGCPIDVV 300
  301 NQKGGGCALP SRPQKLFEVL AATKSVLGGC CPLTVKIRTG MKEGVLKAPE YVEHMKKHSW 360
  361 HTPDLITFHP RSKEQRYTRL ANWDFTFPVQ EATKPVPLWV CGDILSWEDY YERLEQYPVN 420
  421 GIMIGRGALI KPWIFTEIDE RRTWDISSTE RFDLLKKFVD YGLDHWGSDD AGVERTRRFL 480
  481 LEFLSFQCRY IPVGILERLP QRINDRPPRF CGRNELETLL SSQKADDWIE ISTRLLGPTP 540
  541 EGFQFIPKHK ASSY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 8.522879 Solution Structure of the Zinc-finger domain in KIAA1064 protein
    2 View Details [126..467] PSI-BLAST 32.522879 12-oxophytodienoate reductase 1 (OYE homolog)
    3 View Details [468..554] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  2.13899087582327 bayes_pls_golite062009
  • catalytic activity
    		•  1.94749091175302 bayes_pls_golite062009
  • tRNA dihydrouridine synthase activity
    		•  1.94490879164338 bayes_pls_golite062009
  • binding
    		•  1.2785695107981 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle