| Protein: | SSL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 461 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSL1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..461] | [1..461] |
|
|
0.0 | [39..455] | [3..417] |
|
|
0.0 | [68..455] | [2..388] |
|
|
0.0 | [67..457] | [2..388] |
|
|
0.0 | [67..457] | [2..388] |
|
|
0.0 | [67..457] | [2..389] |
|
|
0.0 | [66..458] | [4..407] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MAPVVISESE EDEDRVAITR RTKRQVHFDG EGDDRVDQQQ QQHSSSHRDR DKHVQRKKKK 60
61 RLSNRNLQGS NGGYAWEDEI KRSWDLVKVD DEGDMASLVA SIVEARKKRT AKKNIT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.413 | d.20.1 | UBC-like |
| View | Download | 0.380 | d.110.4 | SNARE-like |
| View | Download | 0.397 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.557 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.375 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.361 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.307 | a.29.2 | Bromodomain |
| View | Download | 0.306 | d.79.3 | L30e-like |
| View | Download | 0.302 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.300 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.290 | a.158.1 | F-box domain |
| View | Download | 0.282 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.274 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.262 | a.29.2 | Bromodomain |
| View | Download | 0.259 | c.54.1 | IIA domain of mannose transporter, IIA-Man |
| View | Download | 0.255 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.240 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.236 | d.20.1 | UBC-like |
| View | Download | 0.220 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.207 | b.1.8 | Cu,Zn superoxide dismutase-like |
| View | Download | 0.206 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.202 | a.1.1 | Globin-like |
| Term | Confidence | Notes |
| binding | 2.75824485094584 | bayes_pls_golite062009 |
| nucleic acid binding | 2.08531850924748 | bayes_pls_golite062009 |
| DNA binding | 1.91667917801679 | bayes_pls_golite062009 |
| protein binding | 1.53311876872122 | bayes_pls_golite062009 |
| protein complex binding | 0.68878168136573 | bayes_pls_golite062009 |
| hydrolase activity | 0.564965244474085 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
| protein dimerization activity | 0.4223194470523 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.32921284315242 | bayes_pls_golite062009 |
|
Region A: Residues: [117-345] |
1 11 21 31 41 51
| | | | | |
1 PYQRGIIRSL ILTLDCSEAM LEKDLRPNRH AMIIQYAIDF VHEFFDQNPI SQMGIIIMRN 60
61 GLAQLVSQVS GNPQDHIDAL KSIRKQEPKG NPSLQNALEM ARGLLLPVPA HCTREVLIVF 120
121 GSLSTTDPGD IHQTIDSLVS EKIRVKVLGL SAQVAICKEL CKATNYGDES FYKILLDETH 180
181 LKELFNEAVT PLPVNKINKG FTLVKMGFPT RIFEDTPTFC SCHSKLVYG
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 1a8x__ |
| Description: | No description for 1a8x__ was found. |
|
Region A: Residues: [346-461] |
1 11 21 31 41 51
| | | | | |
1 GYFCPNCHSK VCSLPTVCPC CDLMLILSTH LARSYHHLMP LKTFAEVPTT EKFRSEDCFS 60
61 CQSRFPILKN HKNGKLLTSS RYRCEDCKQE FCVDCDVFIH EILHNCPGCE SKPVIT
|
| Detection Method: | |
| Confidence: | 95.325697 |
| Match: | 1e53A_ |
| Description: | TFIIH p44 subunit cysteine-rich domain |
