YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|190406046

General Information:
Name(s) found: gi|190406046 [NCBI NR]
Description(s) found:
  • gi|190406046|gb|EDV09313.1| suppressor of stem-loop protein 1 [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 461 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVVISESE EDEDRVAITR RTKRQVHFDG EGDDRVDQQQ QQHSSSHRDR DKHVQRKKKK  60
   61 RLSNRNLQGS NGGYAWEDEI KRSWDLVKVD DEGDMASLVA SIVEARKKRT AKKNITPYQR 120
  121 GIIRSLILTL DCSEAMLEKD LRPNRHAMII QYAIDFVHEF FDQNPISQMG IIIMRNGLAQ 180
  181 LVSQVSGNPQ DHIDALKSIR KQEPKGNPSL QNALEMARGL LLPVPAHCTR EVLIVFGSLS 240
  241 TTDPGDIHQT IDSLVSEKIR VKVLGLSAQV AICKELCKAT NYGDESFYKI LLDETHLKEL 300
  301 FNEAVTPLPV NKINKGFTLV KMGFPTRIFE DTPTFCSCHS KLVYGGYFCP NCHSKVCSLP 360
  361 TVCPCCDLML ILSTHLARSY HHLMPLKTFA EVPTTEKFRS EDCFSCQSRF PILKNHKNGK 420
  421 LLTSSRYRCE DCKQEFCVDC DVFIHEILHN CPGCESKPVI T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] deduced N/A No confident structure predictions are available.
    2 View Details [117..345] PSI-BLAST 19.69897 No description for 1a8x__ was found.
    3 View Details [346..461] PSI-BLAST 95.325697 TFIIH p44 subunit cysteine-rich domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.75824485094584 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.08531850924748 bayes_pls_golite062009
  • DNA binding
    		•  1.91667917801679 bayes_pls_golite062009
  • protein binding
    		•  1.53311876872122 bayes_pls_golite062009
  • protein complex binding
    		•  0.68878168136573 bayes_pls_golite062009
  • hydrolase activity
    		•  0.564965244474085 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.450760554291027 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.4223194470523 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.32921284315242 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle