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Protein Overview: ssl1

General Information:
Name(s) found: ssl1 / SPCC1682.07 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • transcription factor TFIIH complex subunit Ssl1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    holo TFIIH complex [TASLink to PubMed article]
    Biological Process: DNA repair [ISSLink to PubMed article]
    regulation of transcription [IEA]
    transcription initiation from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENQKSFDS DKSESEDEQK NGRVKVRSRK TDDNEGYTWE GEYQRSWDIV QEDAEGSLVG  60
   61 VIAGLIQSGK RKRLLRDTTP LQRGIIRHMV LVLDLSNSME ERDFHHKRFD LQIKYASEFV 120
  121 LEFFEQNPIS QLSIIGVMDG IAHRITDLHG NPQSHIQKLK SLRDCSGNFS LQNALEMARA 180
  181 SLSHIASHGT REVLIIFGSI LSSDPGDIFK TIDALVHDSI RVRIVGLAAE VAICKEICNK 240
  241 TNSSTKNAYG VVISEQHFRE LLLESTIPPA TDSAKTTDAS LVMMGFPSKV VEQLPSLCAC 300
  301 HSIPSRGGFH CPRCKAKVCT LPIECPSCSL VLILSTHLAR SYHHLFPLKN WSEIPWSANP 360
  361 KSTHCFACQL PFPKPPVSPF DESTSSMRYA CPSCKNHFCL DCDVFAHEQL HECYGCQCSG 420
  421 N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..296] PSI-BLAST 25.0 No description for 2ok5A was found.
    2 View Details [297..421] PSI-BLAST 19.0 Solution structure of the carboxy-terminal domain of human TFIIH P44 subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.55976325410124 bayes_pls_golite062009
  • DNA binding
    		•  1.67175195853604 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.66804415166051 bayes_pls_golite062009
  • protein binding
    		•  1.4332924081006 bayes_pls_golite062009
  • protein complex binding
    		•  0.68878168136573 bayes_pls_golite062009
  • hydrolase activity
    		•  0.564965244474085 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.450760554291027 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.4223194470523 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.32921284315242 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle