| Protein: | BAS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 811 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..811] | [1..811] |
|
|
1.0E-80 | [9..418] | [5..419] |
|
|
2.0E-79 | [10..418] | [12..431] |
|
|
1.0E-78 | [9..418] | [5..419] |
|
|
1.0E-77 | [9..418] | [5..419] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MSNISTKDIR KSKPKRGSGF DLLEVTESLG YQTHRKNGRN SWSKDDDNML RSLVNESAKE 60
61 LGYENGLEDV KTIQQSNHLS KCIAWDVLAT RFKHTVRTSK DVRKRWTGSL DPN
|
| Detection Method: |  |
| Confidence: | 202.751666 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.41876985649951 | bayes_pls_golite062009 |
| nucleic acid binding | 4.09724849396574 | bayes_pls_golite062009 |
| transcription factor activity | 3.86239731611043 | bayes_pls_golite062009 |
| binding | 3.55096238224843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.32406445003946 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.50301355818265 | bayes_pls_golite062009 |
| protein binding | 1.44503155604344 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.12996981272574 | bayes_pls_golite062009 |
|
Region A: Residues: [114-164] |
1 11 21 31 41 51
| | | | | |
1 LKKGKWTQEE DEQLLKAYEE HGPHWLSISM DIPGRTEDQC AKRYIEVLGP G
|
| Detection Method: | |
| Confidence: | 202.751666 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [165-226] |
1 11 21 31 41 51
| | | | | |
1 SKGRLREWTL EEDLNLISKV KAYGTKWRKI SSEMEFRPSL TCRNRWRKII TMVVRGQASE 60
61 VI
|
| Detection Method: | |
| Confidence: | 202.751666 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [227-459] |
1 11 21 31 41 51
| | | | | |
1 TKAIKENKNI DMTDGKLRQH PIADSDIRSD STPNKEEQLQ LSQQNNPSLI KQDILNVKEN 60
61 ESSKLPRLKD NDGPILNDSK PQALPPLKEI SAPPPIRMTQ VGQTHTSGSI RSKVSLPIEG 120
121 LSQMNKQSPG GISDSPQTSL PPAFNPASLD EHMMNSNSIS DSPKHAYSTV KTREPNSSST 180
181 QWKFTLKDGQ GLSISNGTID STKLVKELVD QAKKYSLKIS IHQHIHNHYV TST
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [460-811] |
1 11 21 31 41 51
| | | | | |
1 DHPVSSNTGL SNIGNINGNP LLMDSFPHMG RQLGNGLPGL NSNSDTFNPE YRTSLDNMDS 60
61 DFLSRTPNYN AFSLEATSHN PADNANELGS QSNRETNSPS VFYPQANTLI PTNSTATNNE 120
121 IIQGNVSANS MSPNFNGTNG KAPSSTASYT TSGSEMPPDV GPNRIAHFNY LPPTIRPHLG 180
181 SSDATRGADL NKLLNPSPNS VRSNGSKTKK KEKRKSESSQ HHSSSSVTTN KFNHIDQSEI 240
241 SRTTSRSDTP LRDEDGLDFW ETLRSLATTN PNPPVEKSAE NDGAKPQVVH QGIGSHTEDS 300
301 SLGSHSGGYD FFNELLDKKA DTLHNEAKKT SEHDMTSGGS TDNGSVLPLN PS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
