| Protein: | RSM22 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 628 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM22.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..628] | [1..628] |
|
|
0.0 | [44..546] | [81..438] |
|
|
2.0E-99 | [46..551] | [87..518] |
|
|
2.0E-93 | [124..552] | [116..448] |
|
|
2.0E-88 | [79..488] | [2..318] |
|
|
8.0E-87 | [91..550] | [69..529] |
|
|
3.0E-86 | [79..492] | [2..322] |
|
Region A: Residues: [1-491] |
1 11 21 31 41 51
| | | | | |
1 MMKRCFSILP QNVRFSSKFT SLNLPKLDLA DFIDSNKRGI NVLPSYRDET ASTTQATNSK 60
61 ELRLLSKTLQ GQSYRDQLEL NPDVSKAINN NIMAVHIPNN LRRVATNYYK EIQEPNSLHR 120
121 PCRTKMEVDA HIASIFLQNY GSIFQSLKEL QKRVGPDNFK PQRILDVGYG PATGIVALND 180
181 ILGPNYRPDL KDAVILGNAE MQERAKIILS RQLNEVVDTV EENVSTEKEQ ETDRRNKNFQ 240
241 EDEHIGEVMT KKINIMTNLR SSIPASKEYD LIILTHQLLH DGNQFPIQVD ENIEHYLNIL 300
301 APGGHIVIIE RGNPMGFEII ARARQITLRP ENFPDEFGKI PRPWSRGVTV RGKKDAELGN 360
361 ISSNYFLKVI APCPHQRKCP LQVGNPNFYT HKEGKDLKFC NFQKSIKRPK FSIELKKGKL 420
421 LATSWDGSQG NASRLKGTGR RNGRDYEILN YSYLIFERSH KDENTLKEIK KLRNENVNGK 480
481 YDIGSLGDDT Q
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural constituent of ribosome | 5.31568733625259 | bayes_pls_golite062009 |
| structural molecule activity | 5.08906334129014 | bayes_pls_golite062009 |
| transcription factor activity | 2.40166432224452 | bayes_pls_golite062009 |
| catalytic activity | 1.16970557486814 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.06761237121162 | bayes_pls_golite062009 |
| transferase activity | 0.822796502536128 | bayes_pls_golite062009 |
| transcription repressor activity | 0.797794853673959 | bayes_pls_golite062009 |
| binding | 0.501988579312874 | bayes_pls_golite062009 |
| RNA binding | 0.456300482835377 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 0.356820770014331 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.333159018967324 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 0.181009652174389 | bayes_pls_golite062009 |
| nucleic acid binding | 0.167052456820444 | bayes_pls_golite062009 |
| methyltransferase activity | 0.165326524526999 | bayes_pls_golite062009 |
| DNA binding | 0.137717908856835 | bayes_pls_golite062009 |
| transcription regulator activity | 0.11422473545607 | bayes_pls_golite062009 |
| protein binding | 0.0943440397971104 | bayes_pls_golite062009 |
|
Region A: Residues: [492-628] |
1 11 21 31 41 51
| | | | | |
1 NSWPRIINDP VKRKGHVMMD LCAPSGELEK WTVSRSFSKQ IYHDARKSKK GDLWASAAKT 60
61 QIKGLGDLNV KKFHKLEKER IKQLKKEERQ KARKAMESYN ELEDSLQFDD HQFSNFEVMK 120
121 KLSTFHGNDF LQHVNRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [396-548] |
1 11 21 31 41 51
| | | | | |
1 DLKFCNFQKS IKRPKFSIEL KKGKLLATSW DGSQGNASRL KGTGRRNGRD YEILNYSYLI 60
61 FERSHKDENT LKEIKKLRNE NVNGKYDIGS LGDDTQNSWP RIINDPVKRK GHVMMDLCAP 120
121 SGELEKWTVS RSFSKQIYHD ARKSKKGDLW ASA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [549-628] |
1 11 21 31 41 51
| | | | | |
1 AKTQIKGLGD LNVKKFHKLE KERIKQLKKE ERQKARKAME SYNELEDSLQ FDDHQFSNFE 60
61 VMKKLSTFHG NDFLQHVNRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
