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View Structure Prediction Details

Protein: RSM22
Organism: Saccharomyces cerevisiae
Length: 628 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM22.

Description E-value Query
Range
Subject
Range
gi|190409685 - gi|190409685|gb|EDV12950.1| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae...
RT22_YEAST - 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
RSM22 - Mitochondrial ribosomal protein of the small subunit; also predicted to be an S-adenosylmethionine-d...
gi|207343631 - gi|207343631|gb|EDZ71040.1| YKL155Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..628] [1..628]
METT11D1 - methyltransferase 11 domain containing 1
0.0 [44..546] [81..438]
CE09845 - status:Confirmed UniProt:P91862 protein_id:CAB05500.1
2.0E-99 [46..551] [87..518]
gi|13810231 - gi|13810231|emb|CAC37420.1| SPAC19B12.13 [Schizosaccharomyces pombe]
2.0E-93 [124..552] [116..448]
gi|25366556 - pir||AF3307 methyltransferase (EC 2.1.1.-) [imported] - Brucella melitensis (strain 16M)
gi|17982352, gi|... - gi|17986727|ref|NP_539361.1| methyltransferase [Brucella melitensis 16M], gi|17982352|gb|AAL51625.1|...
2.0E-88 [79..488] [2..318]
gi|25404939, gi|... - gi|6633818|gb|AAF19677.1|AC009519_11 F1N19.17 [Arabidopsis thaliana], pir||D96669 protein F1N19.17 [...
8.0E-87 [91..550] [69..529]
gi|14027266, gi|... - gi|14027266|dbj|BAB54220.1| mll7840 [Mesorhizobium loti MAFF303099], gi|13476505|ref|NP_108075.1| hy...
3.0E-86 [79..492] [2..322]

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Predicted Domain #1
Region A:
Residues: [1-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRCFSILP QNVRFSSKFT SLNLPKLDLA DFIDSNKRGI NVLPSYRDET ASTTQATNSK  60
   61 ELRLLSKTLQ GQSYRDQLEL NPDVSKAINN NIMAVHIPNN LRRVATNYYK EIQEPNSLHR 120
  121 PCRTKMEVDA HIASIFLQNY GSIFQSLKEL QKRVGPDNFK PQRILDVGYG PATGIVALND 180
  181 ILGPNYRPDL KDAVILGNAE MQERAKIILS RQLNEVVDTV EENVSTEKEQ ETDRRNKNFQ 240
  241 EDEHIGEVMT KKINIMTNLR SSIPASKEYD LIILTHQLLH DGNQFPIQVD ENIEHYLNIL 300
  301 APGGHIVIIE RGNPMGFEII ARARQITLRP ENFPDEFGKI PRPWSRGVTV RGKKDAELGN 360
  361 ISSNYFLKVI APCPHQRKCP LQVGNPNFYT HKEGKDLKFC NFQKSIKRPK FSIELKKGKL 420
  421 LATSWDGSQG NASRLKGTGR RNGRDYEILN YSYLIFERSH KDENTLKEIK KLRNENVNGK 480
  481 YDIGSLGDDT Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.31568733625259 bayes_pls_golite062009
structural molecule activity 5.08906334129014 bayes_pls_golite062009
transcription factor activity 2.40166432224452 bayes_pls_golite062009
catalytic activity 1.16970557486814 bayes_pls_golite062009
sequence-specific DNA binding 1.06761237121162 bayes_pls_golite062009
transferase activity 0.822796502536128 bayes_pls_golite062009
transcription repressor activity 0.797794853673959 bayes_pls_golite062009
binding 0.501988579312874 bayes_pls_golite062009
RNA binding 0.456300482835377 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.356820770014331 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.333159018967324 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.181009652174389 bayes_pls_golite062009
nucleic acid binding 0.167052456820444 bayes_pls_golite062009
methyltransferase activity 0.165326524526999 bayes_pls_golite062009
DNA binding 0.137717908856835 bayes_pls_golite062009
transcription regulator activity 0.11422473545607 bayes_pls_golite062009
protein binding 0.0943440397971104 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [492-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSWPRIINDP VKRKGHVMMD LCAPSGELEK WTVSRSFSKQ IYHDARKSKK GDLWASAAKT  60
   61 QIKGLGDLNV KKFHKLEKER IKQLKKEERQ KARKAMESYN ELEDSLQFDD HQFSNFEVMK 120
  121 KLSTFHGNDF LQHVNRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [396-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKFCNFQKS IKRPKFSIEL KKGKLLATSW DGSQGNASRL KGTGRRNGRD YEILNYSYLI  60
   61 FERSHKDENT LKEIKKLRNE NVNGKYDIGS LGDDTQNSWP RIINDPVKRK GHVMMDLCAP 120
  121 SGELEKWTVS RSFSKQIYHD ARKSKKGDLW ASA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [549-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKTQIKGLGD LNVKKFHKLE KERIKQLKKE ERQKARKAME SYNELEDSLQ FDDHQFSNFE  60
   61 VMKKLSTFHG NDFLQHVNRK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle