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Protein Overview: gi|190409685

General Information:
Name(s) found: gi|190409685 [NCBI NR]
Description(s) found:
  • gi|190409685|gb|EDV12950.1| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRCFSILP QNVRFSSKFT SLNLPKLDLA DFIDSNKRGI NVLPSYRDET ASTTQATNSK  60
   61 ELRLLSKTLQ GQSYRDQLEL NPDVSKAINN NIMAVHIPNN LRRVATNYYK EIQEPNSLHR 120
  121 PCRTKMEVDA HIASIFLQNY GSIFQSLKEL QKRVGPDNFK PQRILDVGYG PATGIVALND 180
  181 ILGPNYRPDL KDAVILGNAE MQERAKIILS RQLNEVVDTV EENVSTEKEQ ETDRRNKNFQ 240
  241 EDEHIGEVMT KKINIMTNLR SSIPASKEYD LIILTHQLLH DGNQFPIQVD ENIEHYLNIL 300
  301 APGGHIVIIE RGNPMGFEII ARARQITLRP ENFPDEFGKI PRPWSRGVTV RGKKDAELGN 360
  361 ISSNYFLKVI APCPHQRKCP LQVGNPNFYT HKEGKDLKFC NFQKSIKRPK FSIELKKGKL 420
  421 LATSWDGSQG NASRLKGTGR RNGRDYEILN YSYLIFERSH KDENTLKEIK KLRNENVNGK 480
  481 YDIGSLGDDT QNSWPRIIND PVKRKGHVMM DLCAPSGELE KWTVSRSFSK QIYHDARKSK 540
  541 KGDLWASAAK TQIKGLGDLN VKKFHKLEKE RIKQLKKEER QKARKAMESY NELEDSLQFD 600
  601 DHQFSNFEVM KKLSTFHGND FLQHVNRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..491] MSA 3.011936 View MSA. No confident structure predictions are available.
    2 View Details [492..628] deduced N/A No confident structure predictions are available.
    3 View Details [396..548] MSA 2.063984 View MSA. No confident structure predictions are available.
    4 View Details [549..628] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  5.31568733625259 bayes_pls_golite062009
  • structural molecule activity
    		•  5.08906334129014 bayes_pls_golite062009
  • transcription factor activity
    		•  2.40166432224452 bayes_pls_golite062009
  • catalytic activity
    		•  1.16970557486814 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.06761237121162 bayes_pls_golite062009
  • transferase activity
    		•  0.822796502536128 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.797794853673959 bayes_pls_golite062009
  • binding
    		•  0.501988579312874 bayes_pls_golite062009
  • RNA binding
    		•  0.456300482835377 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.356820770014331 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.333159018967324 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.181009652174389 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.167052456820444 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.165326524526999 bayes_pls_golite062009
  • DNA binding
    		•  0.137717908856835 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.11422473545607 bayes_pls_golite062009
  • protein binding
    		•  0.0943440397971104 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle