| Protein: | SPT23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1082 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT23.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1082] | [1..1082] |
|
|
0.0 | [37..1029] | [155..1138] |
|
|
0.0 | [377..980] | [71..714] |
|
|
0.0 | [377..980] | [54..697] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MMSGTGNVSS MLHSYSANIQ HNDGSPDLDL LESELLDIAL LNSGSSLQDP GLLSLNQEKM 60
61 ITAGTTTPGK EDEGELRDDI ASLQGLLDRH VQFGRKLPLR TPYANPLDFI NINPQSLPLS 120
121 LEIIGLPKVS RVETQMKLSF RIRNAHARKN FFIHLPSDCI AKDKFFTSSD DPTNLTIPNR 180
181 D
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [182-500] |
1 11 21 31 41 51
| | | | | |
1 INERTLFLDA FLLCASNNNS NNFKQTYVCN RCINREKRRA SRRKSGLNDN SIWQNNENKR 60
61 AIIFNSKQLF IISNNGLSGN SNCINFDLPT RIVCYCRHHK ATNGFVVLFL LRDHNGDILA 120
121 KTITDPIMIM DKKNASNTTT PTSTSNAQVS PMTNDTRSFS SPQSDLNFPS EFPLPSNSKN 180
181 FVISTNCMLD SNCNNNNNDN DNKNNIKTNT AMMNNNRHFP SPNSSSEDSN HSFSDIHFSN 240
241 NNDNNLHRSL DSWSSTGFNS SSNPALTTLT SDFSAASARH TGKRQRSVNE PFMSTPNTFS 300
301 RLPQKFIDSS KDISNHNSV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [501-585] |
1 11 21 31 41 51
| | | | | |
1 PVALNNKPSI QRVIPAQGSI NGGIEVTLLG SKFKQGLIIK FGENIALSSQ CWNESTMVTY 60
61 LPPSSKPGPV LVTIVDPSET SMRNN
|
| Detection Method: | |
| Confidence: | 12.236572 |
| Match: | PF01833 |
| Description: | IPT/TIG domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37103377984038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.8957142857582 | bayes_pls_golite062009 |
| DNA binding | 1.78305438715057 | bayes_pls_golite062009 |
| transcription activator activity | 1.6418915400902 | bayes_pls_golite062009 |
| transcription factor activity | 1.2667825651547 | bayes_pls_golite062009 |
| transcription factor binding | 1.06366405671195 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.949906091645366 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.590503097160372 | bayes_pls_golite062009 |
| signal transducer activity | 0.177373330518427 | bayes_pls_golite062009 |
| molecular transducer activity | 0.177373330518427 | bayes_pls_golite062009 |
|
Region A: Residues: [586-660] |
1 11 21 31 41 51
| | | | | |
1 SNSSVSTSNS TNDILHLNKY TGEKAIFTYV DDTDRQLIEL ALQIVGLKMN GKLEDARNIA 60
61 KRIVGSDSSP SNNNA
|
| Detection Method: | |
| Confidence: | 71.228787 |
| Match: | 1iknD_ |
| Description: | I-kappa-B-alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [661-737] |
1 11 21 31 41 51
| | | | | |
1 GLHSQNSSLN SYTNMMRNIN DEQLITEVIK SFKRNNNLST VNLSMCDVRG RTLLHLAAFN 60
61 NWYSLVSLLI KYGSHLN
|
| Detection Method: | |
| Confidence: | 71.228787 |
| Match: | 1iknD_ |
| Description: | I-kappa-B-alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [738-799] |
1 11 21 31 41 51
| | | | | |
1 DQDLFGFTPL HMACINGDLR IIRLLLECNV NIMKKTRNGF IAKQFFLMNY TVNKTRYSNY 60
61 ET
|
| Detection Method: | |
| Confidence: | 71.228787 |
| Match: | 1iknD_ |
| Description: | I-kappa-B-alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [800-1027] |
1 11 21 31 41 51
| | | | | |
1 SLFDDILTRL TKNTTGSSDT QPFERNVSQS SFNSSLFDDD DADHDYVQER KYLLADSAAL 60
61 APEQSNCNDN TSFSILDSDS GYDISDCESS SDEIALEFFN THKIKDFSSK PNEIPKTTKT 120
121 SIEPDGSLWN RMLTRLNDEL PKYEDLFPKK PKNWELGSKS VEIGPDNSAQ MTVDDSQTSS 180
181 EDDELEALQV GFNTIFSKKQ NFQNDKMLLF FWIPLTLVLL LCFTLSNL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1028-1082] |
1 11 21 31 41 51
| | | | | |
1 GKDDDMFHNL SKIVQEYLRI GLAKVLLGNE RMKTSFKMQL SKFQNNNILN DMRVN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.699 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.504 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.507 | a.30.1 | ROP protein |
| View | Download | 0.529 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.519 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.478 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.455 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.453 | a.4.1 | Homeodomain-like |
| View | Download | 0.425 | a.17.1 | p8-MTCP1 |
| View | Download | 0.420 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.416 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.406 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.396 | a.4.1 | Homeodomain-like |
| View | Download | 0.380 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.377 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.374 | a.4.1 | Homeodomain-like |
| View | Download | 0.350 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.328 | a.2.7 | tRNA-binding arm |
| View | Download | 0.296 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.285 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.284 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.276 | a.64.1 | Saposin |
| View | Download | 0.276 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.267 | a.140.2 | SAP domain |
| View | Download | 0.265 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.260 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.241 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.241 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.241 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.233 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.229 | a.4.1 | Homeodomain-like |
| View | Download | 0.224 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.221 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.219 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.205 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
