Protein: | PRP40 |
Organism: | Saccharomyces cerevisiae |
Length: | 583 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP40.
Description | E-value | Query Range |
Subject Range |
|
4.0E-91 | [1..583] | [1..583] |
|
6.0E-63 | [2..549] | [303..908] |
|
1.0E-61 | [3..553] | [6..585] |
|
1.0E-58 | [2..566] | [491..1016] |
|
3.0E-58 | [2..550] | [189..778] |
|
2.0E-56 | [2..551] | [34..600] |
|
9.0E-56 | [2..560] | [82..640] |
|
1.0E-55 | [4..551] | [98..681] |
Region A: Residues: [1-33] |
1 11 21 31 41 51 | | | | | | 1 MSIWKEAKDA SGRIYYYNTL TKKSTWEKPK ELI |
Detection Method: | ![]() |
Confidence: | 27.31133 |
Match: | 1e0lA_ |
Description: | Formin binding protein FBP28 domain |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
transcription regulator activity | 2.16402927467227 | bayes_pls_golite062009 |
binding | 2.02935060794966 | bayes_pls_golite062009 |
transcription cofactor activity | 1.56045209816163 | bayes_pls_golite062009 |
transcription coactivator activity | 1.54071619149498 | bayes_pls_golite062009 |
transcription activator activity | 1.50941346594353 | bayes_pls_golite062009 |
transcription factor binding | 1.46474521462806 | bayes_pls_golite062009 |
protein binding | 0.772594643545448 | bayes_pls_golite062009 |
catalytic activity | 0.210712504691113 | bayes_pls_golite062009 |
Region A: Residues: [34-82] |
1 11 21 31 41 51 | | | | | | 1 SQEELLLREN GWKAAKTADG KVYYYNPTTR ETSWTIPAFE KKVEPIAEQ |
Detection Method: | ![]() |
Confidence: | 8.30103 |
Match: | 1i5hW_ |
Description: | Ubiquitin ligase NEDD4 WWIII domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [83-153] |
1 11 21 31 41 51 | | | | | | 1 KHDTVSHAQV NGNRIALTAG EKQEPGRTIN EEESQYANNS KLLNVRRRTK EEAEKEFITM 60 61 LKENQVDSTW S |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [154-494] |
1 11 21 31 41 51 | | | | | | 1 FSRIISELGT RDPRYWMVDD DPLWKKEMFE KYLSNRSADQ LLKEHNETSK FKEAFQKMLQ 60 61 NNSHIKYYTR WPTAKRLIAD EPIYKHSVVN EKTKRQTFQD YIDTLIDTQK ESKKKLKTQA 120 121 LKELREYLNG IITTSSSETF ITWQQLLNHY VFDKSKRYMA NRHFKVLTHE DVLNEYLKIV 180 181 NTIENDLQNK LNELRLRNYT RDRIARDNFK SLLREVPIKI KANTRWSDIY PHIKSDPRFL 240 241 HMLGRNGSSC LDLFLDFVDE QRMYIFAQRS IAQQTLIDQN FEWNDADSDE ITKQNIEKVL 300 301 ENDRKFDKVD KEDISLIVDG LIKQRNEKIQ QKLQNERRIL E |
Detection Method: | ![]() |
Confidence: | 23.69897 |
Match: | 1i84S_ |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [495-583] |
1 11 21 31 41 51 | | | | | | 1 QKKHYFWLLL QRTYTKTGKP KPSTWDLASK ELGESLEYKA LGDEDNIRRQ IFEDFKPESS 60 61 APTAESATAN LTLTASKKRH LTPAVELDY |
Detection Method: | ![]() |
Confidence: | 11.537602 |
Match: | PF01846 |
Description: | FF domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.