| Protein: | PMT4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 762 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMT4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..762] | [1..762] |
|
|
0.0 | [6..754] | [19..734] |
|
|
0.0 | [5..754] | [19..733] |
|
|
0.0 | [5..755] | [25..742] |
|
|
0.0 | [4..755] | [16..746] |
|
|
0.0 | [4..755] | [130..873] |
|
|
0.0 | [11..749] | [11..737] |
|
Region A: Residues: [1-322] |
1 11 21 31 41 51
| | | | | |
1 MSVPKKRNHG KLPPSTKDVD DPSLKYTKAA PKCEQVAEHW LLQPLPEPES RYSFWVTIVT 60
61 LLAFAARFYK IWYPKEVVFD EVHFGKFASY YLERSYFFDV HPPFAKMMIA FIGWLCGYDG 120
121 SFKFDEIGYS YETHPAPYIA YRSFNAILGT LTVPIMFNTL KELNFRAITC AFASLLVAID 180
181 TAHVTETRLI LLDAILIISI AATMYCYVRF YKCQLRQPFT WSWYIWLHAT GLSLSFVIST 240
241 KYVGVMTYSA IGFAAVVNLW QLLDIKAGLS LRQFMRHFSK RLNGLVLIPF VIYLFWFWVH 300
301 FTVLNTSGPG DAFMSAEFQE TL
|
| Detection Method: |  |
| Confidence: | 98.251812 |
| Match: | PF02366 |
| Description: | Dolichyl-phosphate-mannose-protein mannosyltransferase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [323-391] |
1 11 21 31 41 51
| | | | | |
1 KDSPLSVDSK TVNYFDIITI KHQDTDAFLH SHLARYPQRY EDGRISSAGQ QVTGYTHPDF 60
61 NNQWEVLPP
|
| Detection Method: | |
| Confidence: | 11.79588 |
| Match: | PF02815 |
| Description: | MIR domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [392-538] |
1 11 21 31 41 51
| | | | | |
1 HGSDVGKGQA VLLNQHIRLR HVATDTYLLA HDVASPFYPT NEEITTVTLE EGDGELYPET 60
61 LFAFQPLKKS DEGHVLKSKT VSFRLFHVDT SVALWTHNDE LLPDWGFQQQ EINGNKKVID 120
121 PSNNWVVDEI VNLDEVRKVY IPKVVKP
|
| Detection Method: | |
| Confidence: | 10.63 |
| Match: | 1n4kA |
| Description: | IP3 receptor type 1 binding core, domain 2; IP3 receptor type 1 binding core, domain 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 7.33543412640964 | bayes_pls_golite062009 |
| mannosyltransferase activity | 6.32966341675541 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 2.60661923349025 | bayes_pls_golite062009 |
| transferase activity, transferring glycosyl groups | 2.57555885876017 | bayes_pls_golite062009 |
| receptor activity | 1.99332745476324 | bayes_pls_golite062009 |
| binding | 1.86366637427031 | bayes_pls_golite062009 |
| molecular transducer activity | 1.71523634580131 | bayes_pls_golite062009 |
| signal transducer activity | 1.71523634580131 | bayes_pls_golite062009 |
| cation channel activity | 1.66500687404195 | bayes_pls_golite062009 |
| ion channel activity | 1.61859406934521 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.57127083095499 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.55374970486978 | bayes_pls_golite062009 |
| channel activity | 1.55374970486978 | bayes_pls_golite062009 |
| inositol-1,4,5-trisphosphate receptor activity | 1.28298370923705 | bayes_pls_golite062009 |
| transferase activity | 0.981084601370981 | bayes_pls_golite062009 |
| calcium channel activity | 0.85901349040585 | bayes_pls_golite062009 |
| catalytic activity | 0.659936859803906 | bayes_pls_golite062009 |
| calcium-release channel activity | 0.65133561512386 | bayes_pls_golite062009 |
| gated channel activity | 0.53737429019655 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.52162184692236 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.52162184692236 | bayes_pls_golite062009 |
| protein binding | 0.405144403982597 | bayes_pls_golite062009 |
| inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity | 0.152598505509111 | bayes_pls_golite062009 |
|
Region A: Residues: [539-611] |
1 11 21 31 41 51
| | | | | |
1 LPFLKKWIET QKSMFEHNNK LSSEHPFASE PYSWPGSLSG VSFWTNGDEK KQIYFIGNII 60
61 GWWFQVISLA VFV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [612-762] |
1 11 21 31 41 51
| | | | | |
1 GIIVADLITR HRGYYALNKM TREKLYGPLM FFFVSWCCHY FPFFLMARQK FLHHYLPAHL 60
61 IACLFSGALW EVIFSDCKSL DLEKDEDISG ASYERNPKVY VKPYTVFLVC VSCAVAWFFV 120
121 YFSPLVYGDV SLSPSEVVSR EWFDIELNFS K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
