| Protein: | PMT4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 762 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMT4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..762] | [1..762] |
|
|
0.0 | [6..754] | [19..734] |
|
|
0.0 | [5..754] | [19..733] |
|
|
0.0 | [5..755] | [25..742] |
|
|
0.0 | [4..755] | [16..746] |
|
|
0.0 | [4..755] | [130..873] |
|
|
0.0 | [11..749] | [11..737] |
|
Region A: Residues: [1-322] |
1 11 21 31 41 51
| | | | | |
1 MSVPKKRNHG KLPPSTKDVD DPSLKYTKAA PKCEQVAEHW LLQPLPEPES RYSFWVTIVT 60
61 LLAFAARFYK IWYPKEVVFD EVHFGKFASY YLERSYFFDV HPPFAKMMIA FIGWLCGYDG 120
121 SFKFDEIGYS YETHPAPYIA YRSFNAILGT LTVPIMFNTL KELNFRAITC AFASLLVAID 180
181 TAHVTETRLI LLDAILIISI AATMYCYVRF YKCQLRQPFT WSWYIWLHAT GLSLSFVIST 240
241 KYVGVMTYSA IGFAAVVNLW QLLDIKAGLS LRQFMRHFSK RLNGLVLIPF VIYLFWFWVH 300
301 FTVLNTSGPG DAFMSAEFQE TL
|
| Detection Method: |  |
| Confidence: | 98.251812 |
| Match: | PF02366 |
| Description: | Dolichyl-phosphate-mannose-protein mannosyltransferase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [323-391] |
1 11 21 31 41 51
| | | | | |
1 KDSPLSVDSK TVNYFDIITI KHQDTDAFLH SHLARYPQRY EDGRISSAGQ QVTGYTHPDF 60
61 NNQWEVLPP
|
| Detection Method: | |
| Confidence: | 11.79588 |
| Match: | PF02815 |
| Description: | MIR domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [392-538] |
1 11 21 31 41 51
| | | | | |
1 HGSDVGKGQA VLLNQHIRLR HVATDTYLLA HDVASPFYPT NEEITTVTLE EGDGELYPET 60
61 LFAFQPLKKS DEGHVLKSKT VSFRLFHVDT SVALWTHNDE LLPDWGFQQQ EINGNKKVID 120
121 PSNNWVVDEI VNLDEVRKVY IPKVVKP
|
| Detection Method: | |
| Confidence: | 10.63 |
| Match: | 1n4kA |
| Description: | IP3 receptor type 1 binding core, domain 2; IP3 receptor type 1 binding core, domain 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 7.33543412640964 | bayes_pls_golite062009 |
| mannosyltransferase activity | 6.32966341675541 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 2.60661923349025 | bayes_pls_golite062009 |
| transferase activity, transferring glycosyl groups | 2.57555885876017 | bayes_pls_golite062009 |
| receptor activity | 1.99332745476324 | bayes_pls_golite062009 |
| binding | 1.86366637427031 | bayes_pls_golite062009 |
| molecular transducer activity | 1.71523634580131 | bayes_pls_golite062009 |
| signal transducer activity | 1.71523634580131 | bayes_pls_golite062009 |
| cation channel activity | 1.66500687404195 | bayes_pls_golite062009 |
| ion channel activity | 1.61859406934521 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.57127083095499 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.55374970486978 | bayes_pls_golite062009 |
| channel activity | 1.55374970486978 | bayes_pls_golite062009 |
| inositol-1,4,5-trisphosphate receptor activity | 1.28298370923705 | bayes_pls_golite062009 |
| transferase activity | 0.981084601370981 | bayes_pls_golite062009 |
| calcium channel activity | 0.85901349040585 | bayes_pls_golite062009 |
| catalytic activity | 0.659936859803906 | bayes_pls_golite062009 |
| calcium-release channel activity | 0.65133561512386 | bayes_pls_golite062009 |
| gated channel activity | 0.53737429019655 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.52162184692236 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.52162184692236 | bayes_pls_golite062009 |
| protein binding | 0.405144403982597 | bayes_pls_golite062009 |
| inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity | 0.152598505509111 | bayes_pls_golite062009 |
|
Region A: Residues: [539-611] |
1 11 21 31 41 51
| | | | | |
1 LPFLKKWIET QKSMFEHNNK LSSEHPFASE PYSWPGSLSG VSFWTNGDEK KQIYFIGNII 60
61 GWWFQVISLA VFV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.563 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.502 | a.64.1 | Saposin |
| View | Download | 0.669 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.617 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.533 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.669 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.617 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.563 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.533 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.502 | a.64.1 | Saposin |
| View | Download | 0.465 | a.4.1 | Homeodomain-like |
| View | Download | 0.438 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.414 | a.4.1 | Homeodomain-like |
| View | Download | 0.375 | g.35.1 | HIPIP (high potential iron protein) |
| View | Download | 0.335 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.322 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.317 | b.48.1 | mu transposase, C-terminal domain |
| View | Download | 0.309 | a.28.1 | ACP-like |
| View | Download | 0.306 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.296 | b.7.2 | Periplasmic chaperone C-domain |
| View | Download | 0.295 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.294 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.278 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.268 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.254 | a.17.1 | p8-MTCP1 |
| View | Download | 0.247 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.245 | a.74.1 | Cyclin-like |
| View | Download | 0.243 | a.30.1 | ROP protein |
| View | Download | 0.240 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.233 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.232 | a.74.1 | Cyclin-like |
| View | Download | 0.223 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.217 | d.26.1 | FKBP-like |
| View | Download | 0.202 | i.1.1 | Ribosome and ribosomal fragments |
|
Region A: Residues: [612-762] |
1 11 21 31 41 51
| | | | | |
1 GIIVADLITR HRGYYALNKM TREKLYGPLM FFFVSWCCHY FPFFLMARQK FLHHYLPAHL 60
61 IACLFSGALW EVIFSDCKSL DLEKDEDISG ASYERNPKVY VKPYTVFLVC VSCAVAWFFV 120
121 YFSPLVYGDV SLSPSEVVSR EWFDIELNFS K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
