| Protein: | HOM6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 359 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOM6.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-91 | [1..359] | [553..912] |
|
|
3.0E-88 | [1..359] | [557..916] |
|
|
5.0E-85 | [1..359] | [558..917] |
|
|
3.0E-81 | [1..359] | [1..359] |
|
|
2.0E-79 | [1..359] | [548..907] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MSTKVVNVAV IGAGVVGSAF LDQLLAMKST ITYNLVLLAE AERSLISKDF SPLNVGSDWK 60
61 AALAASTTKT LPLDDLIAHL KTSPKPVILV DNTSSAYIAG FYTKFVENGI SIATPNKKAF 120
121 SSDLATWKAL FSNKPTNGFV YHEA
|
|
Region B: Residues: [341-359] |
1 11 21 31 41 51
| | | | | |
1 AAVTAAGVLG DVIKIAQRL
|
| Detection Method: |  |
| Confidence: | 10080.69897 |
| Match: | 1ebfA_ |
| Description: | Homoserine dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 2.54843319568228 | bayes_pls_golite062009 |
| transcription regulator activity | 1.90939908578582 | bayes_pls_golite062009 |
| oxidoreductase activity | 1.84451425136793 | bayes_pls_golite062009 |
| DNA binding | 1.61355789916908 | bayes_pls_golite062009 |
| nucleic acid binding | 1.48478425318425 | bayes_pls_golite062009 |
| binding | 1.22114607236074 | bayes_pls_golite062009 |
| transcription factor activity | 0.91090893050278 | bayes_pls_golite062009 |
| phosphoglycerate dehydrogenase activity | 0.639509916626856 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | 0.610531769148819 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 0.610013758225609 | bayes_pls_golite062009 |
| structural molecule activity | 0.160242197882814 | bayes_pls_golite062009 |
| N-acetyl-gamma-glutamyl-phosphate reductase activity | 0.0651785123513661 | bayes_pls_golite062009 |
|
Region A: Residues: [145-340] |
1 11 21 31 41 51
| | | | | |
1 TVGAGLPIIS FLREIIQTGD EVEKIEGIFS GTLSYIFNEF STSQANDVKF SDVVKVAKKL 60
61 GYTEPDPRDD LNGLDVARKV TIVGRISGVE VESPTSFPVQ SLIPKPLESV KSADEFLEKL 120
121 SDYDKDLTQL KKEAATENKV LRFIGKVDVA TKSVSVGIEK YDYSHPFASL KGSDNVISIK 180
181 TKRYTNPVVI QGAGAG
|
| Detection Method: | |
| Confidence: | 10080.69897 |
| Match: | 1ebfA_ |
| Description: | Homoserine dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
