| Protein: | RSF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1380 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSF2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1380] | [1..1380] |
|
|
0.0 | [326..1221] | [50..979] |
|
|
0.0 | [2..446] | [315..784] |
|
|
0.0 | [2..448] | [398..841] |
|
|
0.0 | [2..446] | [200..641] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MEPFAFGRGA PALCILTAAA RINLDNFVPC CWALFRLSFF FPLDPAYIRN ENKETRTSWI 60
61 SIEFFFFVKH CLSQHTFFSK TLAPKRNFRA KK
|
| Detection Method: |  |
| Confidence: | 61.144602 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [93-202] |
1 11 21 31 41 51
| | | | | |
1 LKDIGDTRID RADKDFLLVP EPSMFVNGNQ SNFAKPAGQG ILPIPKKSRI IKTDKPRPFL 60
61 CPTCTRGFVR QEHLKRHQHS HTREKPYLCI FCGRCFARRD LVLRHQQKLH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28215395396923 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| chromatin binding | 1.37132088004982 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [203-247] |
1 11 21 31 41 51
| | | | | |
1 AALVGTGDPR RMTPAPNSTS SFASKRRHSV AADDPTDLHI IKIAG
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 2drpA_ |
| Description: | Tramtrack protein (two zinc-finger peptide) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [248-323] |
1 11 21 31 41 51
| | | | | |
1 NKETILPTPK NLAGKTSEEL KEAVVALAKS NNVELPVSAP VMNDKREKTP PSKAGSLGFR 60
61 EFKFSTKGVP VHSASS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [324-562] |
1 11 21 31 41 51
| | | | | |
1 DAVIDRANTP SSMHKTKRHA SFSASSAMTY MSSSNSPHHS ITNFELVEDA PHQVGFSTPQ 60
61 MTAKQLMESV SELDLPPLTL DEPPQAIKFN LNLFNNDPSG QQQQQQQQQQ NSTSSTIVNS 120
121 NNGSTVATPG VYLLSSGPSL TDLLTMNSAH AGAGGYMSSH HSPFDLGCFS HDKPTVSEFN 180
181 LPSSFPNTIP SNSTTASNSY SNLANQTYRQ MSNEQPLMSL SPKNPPTTVS DSSSTINFN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [563-1380] |
1 11 21 31 41 51
| | | | | |
1 PGTNNLLEPS MEPNDKDSNI DPAAIDDKWL SEFINNSDPK STFKINFNHF NDIGFIYSPP 60
61 SSRSSIPNKS PPNHSATSLN HEKASLSPRL NLSLNGSTDL PSTPQNQLKE PSYSDPISHS 120
121 SHKRRRDSVM MDYDLSNFFS SRQLDISKVL NGTEQNNSHV NDDVLTLSFP GETDSNATQK 180
181 QLPVLTPSDL LSPFSVPSVS QVLFTNELRS MMLADNNIDS GAFPTTSQLN DYVTYYKEEF 240
241 HPFFSFIHLP SIIPNMDSYP LLLSISMVGA LYGFHSTHAK VLANAASTQI RKSLKVSEKN 300
301 PETTELWVIQ TLVLLTFYCI FNKNTAVIKG MHGQLTTIIR LLKASRLNLP LESLCQPPIE 360
361 SDHIMEYENS PHMFSKIREQ YNAPNQMNKN YQYFVLAQSR IRTCHAVLLI SNLFSSLVGA 420
421 DCCFHSVDLK CGVPCYKEEL YQCRNSDEWS DLLCQYKITL DSKFSLIELS NGNEAYENCL 480
481 RFLSTGDSFF YGNARVSLST CLSLLISIHE KILIERNNAR ISNNNTNSNN IELDDIEWKM 540
541 TSRQRIDTML KYWENLYLKN GGILTPTENS MSTINANPAM RLIIPVYLFA KMRRCLDLAH 600
601 VIEKIWLKDW SNMNKALEEV CYDMGSLREA TEYALNMVDA WTSFFTYIKQ GKRRIFNTPV 660
661 FATTCMFTAV LVISEYMKCV EDWARGYNAN NPNSALLDFS DRVLWLKAER ILRRLQMNLI 720
721 PKECDVLKSY TDFLRWQDKD ALDLSALNEE QAQRAMDPNT DINETIQLIV AASLSSKCLY 780
781 LGVQILGDAP IWPIILSFAH GLQSRAIYSV TKKRNTRI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1218-1380] |
1 11 21 31 41 51
| | | | | |
1 FNTPVFATTC MFTAVLVISE YMKCVEDWAR GYNANNPNSA LLDFSDRVLW LKAERILRRL 60
61 QMNLIPKECD VLKSYTDFLR WQDKDALDLS ALNEEQAQRA MDPNTDINET IQLIVAASLS 120
121 SKCLYLGVQI LGDAPIWPII LSFAHGLQSR AIYSVTKKRN TRI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
