| Protein: | RSF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1380 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSF2.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1380] | [1..1380] |
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0.0 | [326..1221] | [50..979] |
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0.0 | [2..446] | [315..784] |
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0.0 | [2..448] | [398..841] |
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0.0 | [2..446] | [200..641] |
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Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MEPFAFGRGA PALCILTAAA RINLDNFVPC CWALFRLSFF FPLDPAYIRN ENKETRTSWI 60
61 SIEFFFFVKH CLSQHTFFSK TLAPKRNFRA KK
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| Detection Method: |  |
| Confidence: | 61.144602 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [93-202] |
1 11 21 31 41 51
| | | | | |
1 LKDIGDTRID RADKDFLLVP EPSMFVNGNQ SNFAKPAGQG ILPIPKKSRI IKTDKPRPFL 60
61 CPTCTRGFVR QEHLKRHQHS HTREKPYLCI FCGRCFARRD LVLRHQQKLH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28215395396923 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| chromatin binding | 1.37132088004982 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [203-247] |
1 11 21 31 41 51
| | | | | |
1 AALVGTGDPR RMTPAPNSTS SFASKRRHSV AADDPTDLHI IKIAG
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| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 2drpA_ |
| Description: | Tramtrack protein (two zinc-finger peptide) |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [248-323] |
1 11 21 31 41 51
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1 NKETILPTPK NLAGKTSEEL KEAVVALAKS NNVELPVSAP VMNDKREKTP PSKAGSLGFR 60
61 EFKFSTKGVP VHSASS
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.500 | 0.624 | transcription factor activity | a.60.1 | SAM/Pointed domain |
| View | Download | 0.466 | 0.146 | transcription factor activity | a.118.8 | TPR-like |
| View | Download | 0.639 | 0.002 | transcription factor activity | a.77.1 | DEATH domain |
| View | Download | 0.467 | 0.001 | transcription factor activity | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.495 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.464 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.454 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.452 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.450 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.413 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.387 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.366 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.364 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.352 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.348 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.334 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.329 | N/A | N/A | c.15.1 | BRCT domain |
| View | Download | 0.314 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.307 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.304 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.301 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.297 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.286 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.286 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.254 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.245 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.241 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.239 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.233 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.222 | N/A | N/A | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.222 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.221 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.220 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.207 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.205 | N/A | N/A | a.141.1 | Frizzled cystein-rich domain |
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Region A: Residues: [324-562] |
1 11 21 31 41 51
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1 DAVIDRANTP SSMHKTKRHA SFSASSAMTY MSSSNSPHHS ITNFELVEDA PHQVGFSTPQ 60
61 MTAKQLMESV SELDLPPLTL DEPPQAIKFN LNLFNNDPSG QQQQQQQQQQ NSTSSTIVNS 120
121 NNGSTVATPG VYLLSSGPSL TDLLTMNSAH AGAGGYMSSH HSPFDLGCFS HDKPTVSEFN 180
181 LPSSFPNTIP SNSTTASNSY SNLANQTYRQ MSNEQPLMSL SPKNPPTTVS DSSSTINFN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [563-1380] |
1 11 21 31 41 51
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1 PGTNNLLEPS MEPNDKDSNI DPAAIDDKWL SEFINNSDPK STFKINFNHF NDIGFIYSPP 60
61 SSRSSIPNKS PPNHSATSLN HEKASLSPRL NLSLNGSTDL PSTPQNQLKE PSYSDPISHS 120
121 SHKRRRDSVM MDYDLSNFFS SRQLDISKVL NGTEQNNSHV NDDVLTLSFP GETDSNATQK 180
181 QLPVLTPSDL LSPFSVPSVS QVLFTNELRS MMLADNNIDS GAFPTTSQLN DYVTYYKEEF 240
241 HPFFSFIHLP SIIPNMDSYP LLLSISMVGA LYGFHSTHAK VLANAASTQI RKSLKVSEKN 300
301 PETTELWVIQ TLVLLTFYCI FNKNTAVIKG MHGQLTTIIR LLKASRLNLP LESLCQPPIE 360
361 SDHIMEYENS PHMFSKIREQ YNAPNQMNKN YQYFVLAQSR IRTCHAVLLI SNLFSSLVGA 420
421 DCCFHSVDLK CGVPCYKEEL YQCRNSDEWS DLLCQYKITL DSKFSLIELS NGNEAYENCL 480
481 RFLSTGDSFF YGNARVSLST CLSLLISIHE KILIERNNAR ISNNNTNSNN IELDDIEWKM 540
541 TSRQRIDTML KYWENLYLKN GGILTPTENS MSTINANPAM RLIIPVYLFA KMRRCLDLAH 600
601 VIEKIWLKDW SNMNKALEEV CYDMGSLREA TEYALNMVDA WTSFFTYIKQ GKRRIFNTPV 660
661 FATTCMFTAV LVISEYMKCV EDWARGYNAN NPNSALLDFS DRVLWLKAER ILRRLQMNLI 720
721 PKECDVLKSY TDFLRWQDKD ALDLSALNEE QAQRAMDPNT DINETIQLIV AASLSSKCLY 780
781 LGVQILGDAP IWPIILSFAH GLQSRAIYSV TKKRNTRI
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [1218-1380] |
1 11 21 31 41 51
| | | | | |
1 FNTPVFATTC MFTAVLVISE YMKCVEDWAR GYNANNPNSA LLDFSDRVLW LKAERILRRL 60
61 QMNLIPKECD VLKSYTDFLR WQDKDALDLS ALNEEQAQRA MDPNTDINET IQLIVAASLS 120
121 SKCLYLGVQI LGDAPIWPII LSFAHGLQSR AIYSVTKKRN TRI
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
