| Protein: | RAV1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1357 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAV1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1016] | [1..1016] |
|
|
0.0 | [28..1211] | [39..1290] |
|
|
0.0 | [790..1202] | [1471..1915] |
|
|
0.0 | [790..1202] | [1768..2259] |
|
|
0.0 | [1..1197] | [1..1238] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MSLNFLPGRP NATPQTACQA TWQNHTIFAY CSGNNLIILT NKFTRLQTIY TQSDCTAVDI 60
61 NSQNGFIALS FHNRVLIYKP IHQIMQNPKW TQCCQLFH
|
| Detection Method: |  |
| Confidence: | 38.045757 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.79788997337153 | bayes_pls_golite062009 |
| GTPase activity | 1.66665311782591 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| hydrolase activity | 0.28424525033024 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 0.203853592066275 | bayes_pls_golite062009 |
| 0.13986688456512 | bayes_pls_golite062009 | |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [99-498] |
1 11 21 31 41 51
| | | | | |
1 DDTPVNCLRW SSDNELAIGS DFLSFWKIKD NFGVYQPILQ WNQKQPKPVY NVIISQDSQL 60
61 IVSIGKYDCN AKLWKRVSIV GEQAIFNLTM LPHPKPITAM RWKKEPDQVS KNNTASHALY 120
121 TLCEDKVLRI WSCFEMEKNH TVQIWGEVPL SPTQKFCVII DNWIIRQTLS VKDSEIFDIS 180
181 DSDIVILGSM TGEMEVLALN NLSQDPPKPM TKKTISHKKV KKATMLNDTR YLYLPEIQPY 240
241 DNVKGKLSFL VHDLQGVIRH LLIDILQLIN NKTEDLSAAL EHKFTGHNKS VQKLVRSSDG 300
301 EALLTTSRFS ENGVWYPQKL NHGVSLRLQN TIQTESPIKF AVVHELGKQV ICLLENGALQ 360
361 AWECPTNRKE DSEQKQSYLR VETRLKEEKK IHPIVMLNTP
|
| Detection Method: | |
| Confidence: | 42.69897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [499-827] |
1 11 21 31 41 51
| | | | | |
1 EPKHSHERHF TALIFSDGSI KAFEVSLTRG IFEVKSDSLD IDGDDIYKIS IIDPVHQTFV 60
61 SNRPLISLIT KKGLTRTYKA IVNYNDRHVQ WIKACEINTG IMNCTCIRGS STGKLCIVNS 120
121 TGKVMSLWDL NRGVLEYEET FHNPIEDIDW TSTEYGQSIV SIGFTGYALL YTQLRYDYTN 180
181 NTPSYLPIEK IDITAHTAHN IGDSVWMKNG TFVVASGNQF YIKDKSLDLT DPFTYQSIGS 240
241 RKILSNDILH LSSVLNGPLP VYHPQFLIQA IYANKLQLVK ELLLRLFLAL RKLDFESQDV 300
301 SNLDSNLGMD PLKYFIAKDR DYPVESFPD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [828-841] |
1 11 21 31 41 51
| | | | | |
1 PYPCFNKTVS LALT
|
|
Region B: Residues: [853-989] |
1 11 21 31 41 51
| | | | | |
1 TRHQQITLIT VIEAVDEVTK NENIVDYNGV RFLLGVKLFL SHKNIQKSIL MRDVSWALHS 60
61 DNKEILLSSI DRHITSWNRA REYRIAYWIK EQDLVKKFED IAKYEFSKDD KRDPSRCAIF 120
121 YLALKKKQIL LSLWKMA
|
| Detection Method: | |
| Confidence: | 9.54 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [842-852] |
1 11 21 31 41 51
| | | | | |
1 EQLTKTTLPY L
|
|
Region B: Residues: [990-1113] |
1 11 21 31 41 51
| | | | | |
1 IGHPEQQKMV RFISNDFTVP RWRTAALKNA FVLLSKHRYM DAAVFFLLTD SLKDCVNVLC 60
61 KQVHDMDLAI GVCRVYEGDN GPVLGELLTA QMLPETIKEN DRWKASFIYW KLRKQEVAIK 120
121 ALLT
|
| Detection Method: | |
| Confidence: | 9.54 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1114-1357] |
1 11 21 31 41 51
| | | | | |
1 APIDLENNSS IVDKEVCVNR SFLVEDPALL YLYNHLRNRN LKYFIGSLNV EAKIECTLIL 60
61 RVTDILCRMG CNYLAVSLVK NWKFIERNSI PVQKLLKSPT KDRAYSAIGA MASEPISTAR 120
121 MRPSLFDKFG SPSASDIESP NPKLPNSLLD DFLQPPPNST SSNSLAQSSS SAPRSILDEF 180
181 VSPSYSQHKE NLTPKAPNDS VGETDNSENR KDKLSKDILD DLSSQKPQKP KKSAITKNLL 240
241 DDFV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1199-1357] |
1 11 21 31 41 51
| | | | | |
1 ERNSIPVQKL LKSPTKDRAY SAIGAMASEP ISTARMRPSL FDKFGSPSAS DIESPNPKLP 60
61 NSLLDDFLQP PPNSTSSNSL AQSSSSAPRS ILDEFVSPSY SQHKENLTPK APNDSVGETD 120
121 NSENRKDKLS KDILDDLSSQ KPQKPKKSAI TKNLLDDFV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
