| Protein: | LAA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 2014 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [554..1992] | [404..1802] |
|
|
0.0 | [1..2014] | [1..2014] |
|
|
0.0 | [554..1992] | [516..1914] |
|
|
0.0 | [507..1683] | [25..1190] |
|
|
6.0E-52 | [1485..1797] | [1..401] |
|
Region A: Residues: [1-1286] |
1 11 21 31 41 51
| | | | | |
1 MANRSLKKVI ETSSNNGHDL LTWITTNLEK LICLKEVNDN EIQEVKEIHT QLDEFVRYIS 60
61 VLENTDDLEL HSVFISLSQL YTISIWRLKD EYPGVVFDSA AFLTNVLCEE DVSIDDGDTD 120
121 PNQKKKKKKS STKKKKYIYS PAKDIACTIL VQLFENFGSS ISSLIPLLFN AIFKNLKKIM 180
181 EKSKYYHATF MTTLLQLFNA ILRNSNNDDK ILDPATYAKF SKLSKTVFDS ISTDEKDFSV 240
241 TFVSVLIECW TAHFKQTNFI REHSHDIIET IYSRFTEGEI GVYGFANDET RIFTAKSLAE 300
301 ILFDYYFSKN ILTLQEVWSI YVKIFLNCDT RDVESGCFES IIHLINLNLL ADNTFLSNSK 360
361 YLDIVLSLSG VFSSYEVNNR SMNTLSRYLR YFQHMHEVIL PHLNDSAKTQ MLYYILGCSD 420
421 TYQSSSKSDS ASNFKYSIDA KPETQWLTLL QLDFTYVLIS DLGSTFTTEE NTVKEIRDKL 480
481 VDLATCEIFT IRVHTVEILK VFLNNCPEYL SETIENSLRA LSTDFKSTGK FIFHKNHGHA 540
541 FIIANLIKGA ESDYISYELI MRITVFSTSF IKNNTTSTSS NLYFKGLLCW ILLIGLMNYK 600
601 DEQYLKLQIP QLFLFWKVLL THTYTYHDED ELYKNLEIRN HALTCLLTYL SNTTIDKEMA 660
661 KQVSYLLTKC SNFNHSIDLK SKNIDNALLH NENRILQVYL KLEKYINSDF NSSLLILIVK 720
721 NFSDPNLYTE SSSSVLGSLK DIGNRKVSNK DDMESNIVLE SSINTLLRQN NGFAFGLSSK 780
781 ITGDRIVNLS MSSAYKYDES ISGSWPSKDY NWYNIFEVEV SKPISPILSL DSLILLYGSG 840
841 SYSQIDRYAP QVTTSLIDSS MELFSSVFPF LNSKIQYSIM ETLNLSMFSK MTTPLRSVAV 900
901 AANVCSALHN ALRIMQENNL ELDYSVGQLI IESIKKIQFF NDIFLTKIKA DCVGLLTAAI 960
961 ARTLGDEERQ KFLTEQSRIF IKNVADMDEP YLRMFHVLSL ATIFKYNSQY ANFEEYFDVI1020
1021 FALMRDPHPV VHSWSLKAMH ILLEKHLVID LKTAALLLSS MEELLVQDKY GIYGRSTLRC1080
1081 NYNRDFNSHV AIGEISRTLT ETVGPNFLEL NTKVLDSFRN ITLSMLISNN ILNSITSIKM1140
1141 FENIATFKMK NILNYEIFIL ASKSIIKSSI VTGIGSSYFD TTFTGSNELI SRTSSLKGAF1200
1201 ENFDLLTLLY KLQMEEFFMK EMENLSWRYL ALFPNSGSVK NYFTEWILHT FKRDNHWFDK1260
1261 LYSIFNMSLG RLFQSYNRDV SALLEV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1287-1473] |
1 11 21 31 41 51
| | | | | |
1 NGLKKSSEKE IKGEEEESIA NVNQLTDTDA GGLDSENLQW KSRQIILNLI LMLCLESEKY 60
61 ENLLLALSNK IADLIKISFR GSTVRNEGMK LTGLHILNFV LKNYSTMRDP QVPGSSILEQ 120
121 QEAQITSALM PAFSKGSSPT VMSFAITVAA EVLASNIMPP DKLGRISQLL IDLLGNFKDP 180
181 NSGIRIG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1474-1838] |
1 11 21 31 41 51
| | | | | |
1 EAIIVTPKAK RKIELAVLDA WAEVVQRSIT SSNDALFSFT RKYWSILVPL WIISLREYMM 60
61 IKYNDNDSTV QVKNDSKENS LIEPRSTKIE LYEPVWLNFV EALGCTLDSD VQVILASLND 120
121 EELEYFLFIL FSQCLEAIVK NIDDHSVKMQ VLPALHNVLK SNLCIKSIFE DDIITEVVEI 180
181 MDRLISTGDS KEEFLLVDII SDLIIGYSKC NATPETFLQD IDKLYELLRL LMTIISERLP 240
241 FIKYNVLTSE EDDNEIKISP TDISLLKKTF IAFESNISNF DNMFKVDLYS CLLFIIGKIY 300
301 ECSHREVIIP IILPLFKALV KALTESEDEK NIVLLEIFYG SIKDVIYHKL DSKNKVATIL 360
361 ILLSN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1839-2014] |
1 11 21 31 41 51
| | | | | |
1 GYSKLSFQEL NQCANILSEA LNNPATQPIA LQGFKRIISN IFKYPLLQYF MKLVIKRFFQ 60
61 DIQTNDSLSQ ASIKTKLIIQ FSEEVIKQDH QKASLSIALC LSFFAAYHSA YTEKIDNEVA 120
121 SGIVALAKLD KNSFKEAISS TISPQQKAII GSVMEAYVKS QSLGSVEEAF QLKSFD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [551-780] |
1 11 21 31 41 51
| | | | | |
1 ESDYISYELI MRITVFSTSF IKNNTTSTSS NLYFKGLLCW ILLIGLMNYK DEQYLKLQIP 60
61 QLFLFWKVLL THTYTYHDED ELYKNLEIRN HALTCLLTYL SNTTIDKEMA KQVSYLLTKC 120
121 SNFNHSIDLK SKNIDNALLH NENRILQVYL KLEKYINSDF NSSLLILIVK NFSDPNLYTE 180
181 SSSSVLGSLK DIGNRKVSNK DDMESNIVLE SSINTLLRQN NGFAFGLSSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [781-842] |
1 11 21 31 41 51
| | | | | |
1 ITGDRIVNLS MSSAYKYDES ISGSWPSKDY NWYNIFEVEV SKPISPILSL DSLILLYGSG 60
61 SY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [843-1554] |
1 11 21 31 41 51
| | | | | |
1 SQIDRYAPQV TTSLIDSSME LFSSVFPFLN SKIQYSIMET LNLSMFSKMT TPLRSVAVAA 60
61 NVCSALHNAL RIMQENNLEL DYSVGQLIIE SIKKIQFFND IFLTKIKADC VGLLTAAIAR 120
121 TLGDEERQKF LTEQSRIFIK NVADMDEPYL RMFHVLSLAT IFKYNSQYAN FEEYFDVIFA 180
181 LMRDPHPVVH SWSLKAMHIL LEKHLVIDLK TAALLLSSME ELLVQDKYGI YGRSTLRCNY 240
241 NRDFNSHVAI GEISRTLTET VGPNFLELNT KVLDSFRNIT LSMLISNNIL NSITSIKMFE 300
301 NIATFKMKNI LNYEIFILAS KSIIKSSIVT GIGSSYFDTT FTGSNELISR TSSLKGAFEN 360
361 FDLLTLLYKL QMEEFFMKEM ENLSWRYLAL FPNSGSVKNY FTEWILHTFK RDNHWFDKLY 420
421 SIFNMSLGRL FQSYNRDVSA LLEVNGLKKS SEKEIKGEEE ESIANVNQLT DTDAGGLDSE 480
481 NLQWKSRQII LNLILMLCLE SEKYENLLLA LSNKIADLIK ISFRGSTVRN EGMKLTGLHI 540
541 LNFVLKNYST MRDPQVPGSS ILEQQEAQIT SALMPAFSKG SSPTVMSFAI TVAAEVLASN 600
601 IMPPDKLGRI SQLLIDLLGN FKDPNSGIRI GEAIIVTPKA KRKIELAVLD AWAEVVQRSI 660
661 TSSNDALFSF TRKYWSILVP LWIISLREYM MIKYNDNDST VQVKNDSKEN SL
|
| Detection Method: | |
| Confidence: | 1.19 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 4.44172446279719 | bayes_pls_golite062009 |
| protein transporter activity | 3.8871835220517 | bayes_pls_golite062009 |
| transporter activity | 2.3766833486706 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.12926593993985 | bayes_pls_golite062009 |
| binding | 2.08129940242136 | bayes_pls_golite062009 |
| protein binding | 2.0097220759196 | bayes_pls_golite062009 |
| structural molecule activity | 1.70115473462412 | bayes_pls_golite062009 |
| signal sequence binding | 1.53212344797955 | bayes_pls_golite062009 |
| RNA binding | 1.423416093612 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.2724388835449 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.04982314606251 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.824035252349223 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.260663498540354 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.256036243669218 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.234271600707329 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.225395946682209 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.186601655036333 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.183072614802483 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.182751938544977 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.15186105020367 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.109435859778099 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0728493557966827 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0641324729536009 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0615190129942244 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0475280280823402 | bayes_pls_golite062009 |
|
Region A: Residues: [1555-1684] |
1 11 21 31 41 51
| | | | | |
1 IEPRSTKIEL YEPVWLNFVE ALGCTLDSDV QVILASLNDE ELEYFLFILF SQCLEAIVKN 60
61 IDDHSVKMQV LPALHNVLKS NLCIKSIFED DIITEVVEIM DRLISTGDSK EEFLLVDIIS 120
121 DLIIGYSKCN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1685-1802] |
1 11 21 31 41 51
| | | | | |
1 ATPETFLQDI DKLYELLRLL MTIISERLPF IKYNVLTSEE DDNEIKISPT DISLLKKTFI 60
61 AFESNISNFD NMFKVDLYSC LLFIIGKIYE CSHREVIIPI ILPLFKALVK ALTESEDE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1803-1881] |
1 11 21 31 41 51
| | | | | |
1 KNIVLLEIFY GSIKDVIYHK LDSKNKVATI LILLSNGYSK LSFQELNQCA NILSEALNNP 60
61 ATQPIALQGF KRIISNIFK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1882-2014] |
1 11 21 31 41 51
| | | | | |
1 YPLLQYFMKL VIKRFFQDIQ TNDSLSQASI KTKLIIQFSE EVIKQDHQKA SLSIALCLSF 60
61 FAAYHSAYTE KIDNEVASGI VALAKLDKNS FKEAISSTIS PQQKAIIGSV MEAYVKSQSL 120
121 GSVEEAFQLK SFD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
