| Protein: | SWI3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 825 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..825] | [1..825] |
|
|
0.0 | [299..739] | [12..455] |
|
|
4.0E-95 | [149..726] | [2..652] |
|
|
4.0E-92 | [83..714] | [245..809] |
|
|
4.0E-90 | [83..668] | [220..762] |
|
|
4.0E-88 | [228..742] | [3..535] |
|
|
4.0E-77 | [89..660] | [214..757] |
|
Region A: Residues: [1-6] |
1 11 21 31 41 51
| | | | | |
1 MENTLG
|
|
Region B: Residues: [229-308] |
1 11 21 31 41 51
| | | | | |
1 TSSVANTPSE IPDAHKAEQE DIIEKTESVD KKVDSGEERN EQEREIMNDH SKSANPKKTT 60
61 ITRVEPETFE IPQAHEIVIP
|
| Detection Method: |  |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [7-79] |
1 11 21 31 41 51
| | | | | |
1 EGSTVNASVD VDQHGNDNNS DSNANAAVAG VANTDTAGEE SQQQDESLKD EATVPNTRDA 60
61 ESEAITVTAK QQP
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [80-158] |
1 11 21 31 41 51
| | | | | |
1 TMQANKLDSQ ETPSTEESRA QNVFGQDNED SDNLFGETES SVSNNEANTP SIPTNPVDNE 60
61 NNKPAIKEDS TIQDSNGDV
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [159-228] |
1 11 21 31 41 51
| | | | | |
1 KNMEDVKIQK EEEPENNTVI EGVKEESQPD ENTKEMDEVE EDDEDDDQPM ISPDNSIFGD 60
61 TKSESKQLGN
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [309-409] |
1 11 21 31 41 51
| | | | | |
1 SYSKWFNLEK IHSIEVQSLP EFFTNRIPSK TPEVYMRYRN FMVNSYRLNP NEYFSVTTAR 60
61 RNVSGDAAAL FRLHKFLTKW GLINYQVDSK LLPKNIEPPL T
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [410-485] |
1 11 21 31 41 51
| | | | | |
1 SQYSTRHDAP RGLFPFESYK PSVQLPDMAK LKKMMNTSDS ESTLYKYLKE SKRKYDEITH 60
61 PPSTTDDENG DKNDNG
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1h8qA_ |
| Description: | No description for 1h8qA_ was found. |
|
Region A: Residues: [486-596] |
1 11 21 31 41 51
| | | | | |
1 GKMNNEVSTS TSMTGDANLL EEGETSRPLK KVKILEQIDE NWSKEDLQKL LKGIQEFGAD 60
61 WYKVAKNVGN KSPEQCILRF LQLPIEDKFL YGDGNGKGDN DNGLGPLKYA P
|
| Detection Method: | |
| Confidence: | 9.36 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [597-825] |
1 11 21 31 41 51
| | | | | |
1 HLPFSKSENP VLSTIAFLVG LVNPKTVQSM TQRAIQSAES IKSQKEEISD QKPIEHIKEG 60
61 SEIAISSLGY RSHIFATNEE RQMNFLTNEL IRLQMEKLDA KLNHLKKLEK FMELERKTLE 120
121 RQQENLLIQR LNFNQNSSKI VNVLSKCLNL ISDSNINNSS VAEKEEIRSQ IDHFKSMLSK 180
181 PETLSIGKNP FNKPNIETGE NHNGQSISNE NDVKPISIEA PQFYRYWSA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
