| Protein: | SWI3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 825 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..825] | [1..825] |
|
|
0.0 | [299..739] | [12..455] |
|
|
4.0E-95 | [149..726] | [2..652] |
|
|
4.0E-92 | [83..714] | [245..809] |
|
|
4.0E-90 | [83..668] | [220..762] |
|
|
4.0E-88 | [228..742] | [3..535] |
|
|
4.0E-77 | [89..660] | [214..757] |
|
Region A: Residues: [1-6] |
1 11 21 31 41 51
| | | | | |
1 MENTLG
|
|
Region B: Residues: [229-308] |
1 11 21 31 41 51
| | | | | |
1 TSSVANTPSE IPDAHKAEQE DIIEKTESVD KKVDSGEERN EQEREIMNDH SKSANPKKTT 60
61 ITRVEPETFE IPQAHEIVIP
|
| Detection Method: |  |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [7-79] |
1 11 21 31 41 51
| | | | | |
1 EGSTVNASVD VDQHGNDNNS DSNANAAVAG VANTDTAGEE SQQQDESLKD EATVPNTRDA 60
61 ESEAITVTAK QQP
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [80-158] |
1 11 21 31 41 51
| | | | | |
1 TMQANKLDSQ ETPSTEESRA QNVFGQDNED SDNLFGETES SVSNNEANTP SIPTNPVDNE 60
61 NNKPAIKEDS TIQDSNGDV
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [159-228] |
1 11 21 31 41 51
| | | | | |
1 KNMEDVKIQK EEEPENNTVI EGVKEESQPD ENTKEMDEVE EDDEDDDQPM ISPDNSIFGD 60
61 TKSESKQLGN
|
| Detection Method: | |
| Confidence: | 14.29 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [309-409] |
1 11 21 31 41 51
| | | | | |
1 SYSKWFNLEK IHSIEVQSLP EFFTNRIPSK TPEVYMRYRN FMVNSYRLNP NEYFSVTTAR 60
61 RNVSGDAAAL FRLHKFLTKW GLINYQVDSK LLPKNIEPPL T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.642 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.567 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.522 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.478 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.440 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.382 | c.1.8 | (Trans)glycosidases |
| View | Download | 0.359 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.341 | c.55.4 | Translational machinery components |
| View | Download | 0.336 | a.11.2 | Second domain of FERM |
| View | Download | 0.334 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.328 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.322 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.313 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.309 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.306 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.304 | c.46.1 | Rhodanese/Cell cycle control phosphatase |
| View | Download | 0.290 | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.285 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.279 | c.55.4 | Translational machinery components |
| View | Download | 0.277 | d.68.4 | YhbY-like |
| View | Download | 0.276 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.274 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.269 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.265 | d.58.49 | YajQ-like |
| View | Download | 0.262 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.249 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.247 | a.118.1 | ARM repeat |
| View | Download | 0.246 | c.50.1 | Macro domain-like |
| View | Download | 0.239 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.236 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.234 | a.74.1 | Cyclin-like |
| View | Download | 0.233 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.231 | a.118.1 | ARM repeat |
| View | Download | 0.222 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.220 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | d.164.1 | SMAD MH1 domain |
| View | Download | 0.212 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.209 | c.10.1 | RNI-like |
| View | Download | 0.207 | a.118.1 | ARM repeat |
|
Region A: Residues: [410-485] |
1 11 21 31 41 51
| | | | | |
1 SQYSTRHDAP RGLFPFESYK PSVQLPDMAK LKKMMNTSDS ESTLYKYLKE SKRKYDEITH 60
61 PPSTTDDENG DKNDNG
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1h8qA_ |
| Description: | No description for 1h8qA_ was found. |
|
Region A: Residues: [486-596] |
1 11 21 31 41 51
| | | | | |
1 GKMNNEVSTS TSMTGDANLL EEGETSRPLK KVKILEQIDE NWSKEDLQKL LKGIQEFGAD 60
61 WYKVAKNVGN KSPEQCILRF LQLPIEDKFL YGDGNGKGDN DNGLGPLKYA P
|
| Detection Method: | |
| Confidence: | 9.36 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [597-825] |
1 11 21 31 41 51
| | | | | |
1 HLPFSKSENP VLSTIAFLVG LVNPKTVQSM TQRAIQSAES IKSQKEEISD QKPIEHIKEG 60
61 SEIAISSLGY RSHIFATNEE RQMNFLTNEL IRLQMEKLDA KLNHLKKLEK FMELERKTLE 120
121 RQQENLLIQR LNFNQNSSKI VNVLSKCLNL ISDSNINNSS VAEKEEIRSQ IDHFKSMLSK 180
181 PETLSIGKNP FNKPNIETGE NHNGQSISNE NDVKPISIEA PQFYRYWSA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
