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Protein Overview: psa-1

General Information:
Name(s) found: psa-1 / CE25208 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004203 locus:swsn-1 status:Confirmed UniProt:G5EF87 protein_id:CAB54337.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 789 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: negative regulation of vulval development [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    regulation of oviposition [IMPLink to PubMed article]
    nematode larval development [IGILink to PubMed article][IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IGILink to PubMed article][IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gonad morphogenesis [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IGILink to PubMed article]
    reproduction [IGILink to PubMed article][IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK GQKLTDLDEE  60
   61 GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI EKRAMPEFFN GKNKSKTPDV 120
  121 YVAYRNFMVD TYRLNPFEYV SATACRRNLA GDVCSIVRLH SFLEQWGLLN YQVDSDARPA 180
  181 PVAPPPTSHF MVLADTPTGI QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ 240
  241 KQAIAMRTKG APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI 300
  301 QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL ASVVDPQVAA 360
  361 AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD GAVGLTKSGL KPAEEAAGDS 420
  421 DEKMDTNTND DVPSTTEAKS AIDKGVQAAA ASCLAAAAVK AKHLAQIEER RIKSLVAQLV 480
  481 ETQMKKLEMK LRHFDELEQI MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS 540
  541 RMTSSGALPA GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ 600
  601 APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP YPPPQQQQQH 660
  661 QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY GPPGGYPPQQ QRPPYQAQPY 720
  721 PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD 780
  781 GGDSQQKQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] deduced N/A No confident structure predictions are available.
    2 View Details [76..178] PSI-BLAST 44.39794 Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
    3 View Details [179..320] FFAS03 2.7 No description for 2nogA was found.
    4 View Details [321..404] FFAS03 2.9 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    5 View Details [405..789] PSI-BLAST 28.09691 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle