| Protein: | psa-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 789 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psa-1.
| Description | E-value | Query Range |
Subject Range |
|
|
611.0 | [0..2] | [577..345] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK GQKLTDLDEE 60
61 GVQSTKEAPQ LAEGN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [76-178] |
1 11 21 31 41 51
| | | | | |
1 VIEQTHYIVV PSYAGWFDYN AIHQIEKRAM PEFFNGKNKS KTPDVYVAYR NFMVDTYRLN 60
61 PFEYVSATAC RRNLAGDVCS IVRLHSFLEQ WGLLNYQVDS DAR
|
| Detection Method: | |
| Confidence: | 44.39794 |
| Match: | 2fq3A |
| Description: | Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [179-320] |
1 11 21 31 41 51
| | | | | |
1 PAPVAPPPTS HFMVLADTPT GIQPMNPPGK ESAGASGEPP KEEIKTEIES ISTPGLKIDQ 60
61 YQKQAIAMRT KGAPPGRDWT EQETCLLLEA LEMFKDDWNK VCDHVGTRTQ HECVLKFLQL 120
121 PIQDPYLTEN LSSDKAEAAP GG
|
| Detection Method: | |
| Confidence: | 2.7 |
| Match: | 2nogA |
| Description: | No description for 2nogA was found. |
|
Region A: Residues: [321-404] |
1 11 21 31 41 51
| | | | | |
1 AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL ASVVDPQVAA AATKAAMEEF GKLKEEIPPL 60
61 VAEAHEKNVA AMAEKTGQVD GAVG
|
| Detection Method: | |
| Confidence: | 2.9 |
| Match: | 1a5jA |
| Description: | CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [405-789] |
1 11 21 31 41 51
| | | | | |
1 LTKSGLKPAE EAAGDSDEKM DTNTNDDVPS TTEAKSAIDK GVQAAAASCL AAAAVKAKHL 60
61 AQIEERRIKS LVAQLVETQM KKLEMKLRHF DELEQIMDKE RESLEYQRHQ LILERQAFHM 120
121 DQLKYLENRA KHEAHSRMTS SGALPAGLPP GFEVTGPPQP TPQVQISAQE AAIPEKMDTS 180
181 EAATAARPPS TPQAPQAPPV QAAPAPVQAP QAPQAPPQAY QGYGGPGGPP QQAYRYPPQQ 240
241 GQQYSPYPPP QQQQQHQAQQ AQSQAHYGPP GGGQGPPPPP QGQQYYGGPP PPGQPYGPPG 300
301 GYPPQQQRPP YQAQPYPGPP PPQQQRGYGY PPPPQPGHPY QQPYGQMPPP PHGQYQPQQQ 360
361 QGGPMGPPGG HHEGGDGGDS QQKQE
|
| Detection Method: | |
| Confidence: | 28.09691 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
